Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-301 |
| Cow position: | chr19:14940775-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 1-330 |
| Cow position: | chr19:20635350-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 1-462 |
| Cow position: | chr19:14940607-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-507 |
| Cow position: | chr19:23614135-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 1-512 |
| Cow position: | chr19:23596979-23597488 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 1-517 |
| Cow position: | chr19:23597144-23597661 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 119 |
| Conread position: | 1-589 |
| Cow position: | chr19:23614303-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 1-594 |
| Cow position: | chr19:14940019-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 1-594 |
| Cow position: | chr19:14960360-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 2-562 |
| Cow position: | chr19:23596897-23597457 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 136 |
| Conread position: | 2-577 |
| Cow position: | chr19:23614556-23615134 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 3-594 |
| Cow position: | chr19:14959620-14959040 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 377 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 267 |
| Conread position: | 3-636 |
| Cow position: | chr19:23613885-23614526 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 8-597 |
| Cow position: | chr19:43570342-43569760 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 11 |
| Conread position: | 14-562 |
| Cow position: | chr19:14939950-14940500 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 25 |
| Conread position: | 14-589 |
| Cow position: | chr19:23596826-23597399 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 15-376 |
| Cow position: | chr19:43570010-43569653 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 17-424 |
| Cow position: | chr19:14948418-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 187, 14 |
| Conread position: | 17-507 |
| Cow position: | chr19:14940288-14940778 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 17-596 |
| Cow position: | chr19:14960427-14959846 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 165 |
| Conread position: | 17-596 |
| Cow position: | chr19:23614488-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 331 |
| Conread position: | 17-636 |
| Cow position: | chr19:14940120-14940746 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 103 |
| Conread position: | 18-635 |
| Cow position: | chr19:20677412-20678036 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 19-408 |
| Cow position: | chr19:20635415-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 334, 329 |
| Conread position: | 19-512 |
| Cow position: | chr19:20677665-20678158 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 100 |
| Conread position: | 19-588 |
| Cow position: | chr19:23613482-23614054 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 94 |
| Conread position: | 19-636 |
| Cow position: | chr19:23613566-23614190 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 19-636 |
| Cow position: | chr19:23614238-23614862 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 20-390 |
| Cow position: | chr19:14959191-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 335, 73 |
| Conread position: | 20-493 |
| Cow position: | chr19:43570173-43569702 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 20-508 |
| Cow position: | chr19:14960006-14959534 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 145, 131 |
| Conread position: | 20-512 |
| Cow position: | chr19:23649437-23649929 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 167 |
| Conread position: | 20-515 |
| Cow position: | chr19:23649689-23650184 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 99 |
| Conread position: | 20-516 |
| Cow position: | chr19:20678254-20678747 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 20-544 |
| Cow position: | chr19:20635582-20635059 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 183 |
| Conread position: | 20-561 |
| Cow position: | chr19:23613399-23613943 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 161 |
| Conread position: | 20-596 |
| Cow position: | chr19:14940459-14941039 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 542 |
| Conread position: | 20-636 |
| Cow position: | chr19:14940375-14940998 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 21-429 |
| Cow position: | chr19:23650026-23650434 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 183, 178 |
| Conread position: | 23-494 |
| Cow position: | chr19:23649860-23650331 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 90 |
| Conread position: | 24-397 |
| Cow position: | chr19:23650113-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 70, 89 |
| Conread position: | 24-508 |
| Cow position: | chr19:23649609-23650093 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 24-517 |
| Cow position: | chr19:20635494-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 166 |
| Conread position: | 24-594 |
| Cow position: | chr19:20677838-20678411 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 24-594 |
| Cow position: | chr19:23649525-23650098 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 258 |
| Conread position: | 25-508 |
| Cow position: | chr19:20678091-20678574 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 248 |
| Conread position: | 25-632 |
| Cow position: | chr19:23613656-23614270 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 496, 537 |
| Conread position: | 26-485 |
| Cow position: | chr19:23597254-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 171 |
| Conread position: | 26-512 |
| Cow position: | chr19:23649947-23650433 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 168 |
| Conread position: | 26-602 |
| Cow position: | chr19:20677924-20678504 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 168 |
| Conread position: | 32-594 |
| Cow position: | chr19:20678014-20678579 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 159 |
| Conread position: | 33-470 |
| Cow position: | chr19:14960161-14959726 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 348 |
| Conread position: | 35-507 |
| Cow position: | chr19:23649788-23650260 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 35-584 |
| Cow position: | chr19:23649284-23649832 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 72 |
| Conread position: | 35-595 |
| Cow position: | chr19:20678185-20678746 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 35-607 |
| Cow position: | chr19:20677765-20678341 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 238 |
| Conread position: | 35-636 |
| Cow position: | chr19:14959669-14959078 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 378 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 38-470 |
| Cow position: | chr19:14959257-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 39-435 |
| Cow position: | chr19:14948480-14948085 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 165, 80 |
| Conread position: | 40-635 |
| Cow position: | chr19:20635646-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 512 |
| Conread position: | 46-573 |
| Cow position: | chr19:20677608-20678137 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 151 |
| Conread position: | 55-636 |
| Cow position: | chr19:14960475-14959887 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 213 |
| Conread position: | 117-597 |
| Cow position: | chr19:23649282-23649766 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 118-482 |
| Cow position: | chr19:14959670-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 246, 19 |
| Conread position: | 118-516 |
| Cow position: | chr19:14916028-14916421 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 119-512 |
| Cow position: | chr19:14948484-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 239, 84 |
| Conread position: | 125-512 |
| Cow position: | chr19:14959254-14958873 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 136 |
| Conread position: | 125-573 |
| Cow position: | chr19:43570394-43569954 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 116 |
| Conread position: | 133-512 |
| Cow position: | chr19:43570546-43570185 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 140-596 |
| Cow position: | chr19:23613351-23613811 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 159-602 |
| Cow position: | chr19:20677304-20677748 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 202-512 |
| Cow position: | chr19:14959670-14959362 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 202-595 |
| Cow position: | chr19:14916028-14916420 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 100 |
| Conread position: | 219-509 |
| Cow position: | chr19:14960477-14960188 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 285, 0 |
| Conread position: | 222-574 |
| Cow position: | chr19:14915962-14916314 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 237-507 |
| Cow position: | chr19:20635701-20635431 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 284-512 |
| Cow position: | chr19:23649281-23649509 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 303-573 |
| Cow position: | chr19:14960477-14960205 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 215, 255 |
| Conread position: | 356-632 |
| Cow position: | chr19:23613315-23613598 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 23 |
Show alignments to all cow chromosomes.