Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-561 |
| Cow position: | chr2:82799639-82800203 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 197 |
| Conread position: | 1-569 |
| Cow position: | chr2:78754861-78755431 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 1-594 |
| Cow position: | chr2:78755029-78755624 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 2-512 |
| Cow position: | chr2:5875150-5874641 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 7-508 |
| Cow position: | chr2:86465134-86465635 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 207 |
| Conread position: | 7-562 |
| Cow position: | chr2:78754632-78755174 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 513, 73 |
| Conread position: | 8-565 |
| Cow position: | chr2:78755873-78756430 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 106 |
| Conread position: | 13-566 |
| Cow position: | chr2:78754220-78754770 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 222 |
| Conread position: | 14-502 |
| Cow position: | chr2:5874634-5874147 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 14-562 |
| Cow position: | chr2:78754140-78754686 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 339 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 15-505 |
| Cow position: | chr2:82799570-82800060 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 80 |
| Conread position: | 17-517 |
| Cow position: | chr2:78755548-78756046 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 17-561 |
| Cow position: | chr2:86465564-86466111 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 335 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 18-399 |
| Cow position: | chr2:86465901-86466280 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 20-525 |
| Cow position: | chr2:86465231-86465735 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 20-561 |
| Cow position: | chr2:82799491-82800035 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 179 |
| Conread position: | 25-505 |
| Cow position: | chr2:5874961-5874480 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 6, 74 |
| Conread position: | 34-502 |
| Cow position: | chr2:5874699-5874231 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 85 |
| Conread position: | 35-387 |
| Cow position: | chr2:82800094-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 35-478 |
| Cow position: | chr2:5874782-5874339 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 35-560 |
| Cow position: | chr2:78754812-78755341 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 35-562 |
| Cow position: | chr2:82799758-82800288 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 35-588 |
| Cow position: | chr2:78755232-78755784 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 477, 106 |
| Conread position: | 35-588 |
| Cow position: | chr2:82799842-82800398 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 84 |
| Conread position: | 40-512 |
| Cow position: | chr2:86465083-86465555 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 41-470 |
| Cow position: | chr2:82800016-82800445 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 47-507 |
| Cow position: | chr2:82799938-82800398 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 151 |
| Conread position: | 76-430 |
| Cow position: | chr2:5875159-5874807 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 118-507 |
| Cow position: | chr2:86465077-86465466 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 165, 176 |
| Conread position: | 118-520 |
| Cow position: | chr2:48689478-48689078 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 239, 75 |
| Conread position: | 155-512 |
| Cow position: | chr2:82799458-82799815 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 156-509 |
| Cow position: | chr2:78754114-78754461 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 197, 53 |
| Conread position: | 161-471 |
| Cow position: | chr2:86465960-86466268 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 208-516 |
| Cow position: | chr2:86465923-86466229 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 149, 140 |
| Conread position: | 238-507 |
| Cow position: | chr2:82799457-82799726 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.