Cow genome map

Conread name: Ss1.1-rgul0101_i8.5

Conread position: 1-481
Cow position: chr22:12458243-12457762 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 101

Conread position: 1-493
Cow position: chr22:12418998-12418505 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 113

Conread position: 1-508
Cow position: chr22:14430179-14430687 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 313
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 35, 105

Conread position: 1-509
Cow position: chr22:12458579-12458071 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 152

Conread position: 1-512
Cow position: chr22:14441989-14442501 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 311
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 8, 71

Conread position: 1-512
Cow position: chr22:46654042-46654554 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 113

Conread position: 1-517
Cow position: chr22:12431795-12431279 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 194

Conread position: 1-559
Cow position: chr22:12458327-12457772 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 270

Conread position: 1-571
Cow position: chr22:12458411-12457838 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 348

Conread position: 1-589
Cow position: chr22:12385639-12385045 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 1-589
Cow position: chr22:14468004-14468596 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 95

Conread position: 1-594
Cow position: chr22:12432299-12431702 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 543

Conread position: 1-594
Cow position: chr22:14429843-14430440 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 71

Conread position: 1-596
Cow position: chr22:12399395-12398795 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 552

Conread position: 1-609
Cow position: chr22:14468088-14468699 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 374
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 12, 27

Conread position: 1-636
Cow position: chr22:12475940-12475297 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 113

Conread position: 2-512
Cow position: chr22:12385470-12384957 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 284

Conread position: 3-312
Cow position: chr22:12475602-12475292 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 208
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 111

Conread position: 3-400
Cow position: chr22:11641058-11641455 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-512
Cow position: chr22:14429762-14430271 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 110

Conread position: 3-594
Cow position: chr22:12476358-12475763 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 558

Conread position: 3-636
Cow position: chr22:12399890-12399256 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 51

Conread position: 3-636
Cow position: chr22:12498902-12499542 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 335

Conread position: 4-510
Cow position: chr22:12432465-12431957 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 98

Conread position: 4-512
Cow position: chr22:12419077-12418570 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 289
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 101, 67

Conread position: 6-594
Cow position: chr22:12399474-12398882 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 547

Conread position: 6-600
Cow position: chr22:12499241-12499839 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 346

Conread position: 7-424
Cow position: chr22:12431032-12430615 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 260
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 107, 77

Conread position: 7-462
Cow position: chr22:12385378-12384923 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-484
Cow position: chr22:46654385-46654863 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 0

Conread position: 7-521
Cow position: chr22:46654217-46654731 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 106

Conread position: 16-312
Cow position: chr22:12499671-12499967 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 91, 97

Conread position: 16-507
Cow position: chr22:11640819-11641310 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 27

Conread position: 17-485
Cow position: chr22:12475755-12475287 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 83

Conread position: 17-512
Cow position: chr22:11640904-11641399 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 182

Conread position: 17-594
Cow position: chr22:12431358-12430778 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 18-510
Cow position: chr22:46654313-46654803 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 311
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 5

Conread position: 18-573
Cow position: chr22:12399629-12399072 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 180

Conread position: 18-594
Cow position: chr22:11640653-11641232 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 18

Conread position: 18-600
Cow position: chr22:14429693-14430279 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 28

Conread position: 19-395
Cow position: chr22:12418811-12418435 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 245
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 178, 185

Conread position: 20-493
Cow position: chr22:12431103-12430630 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 300
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 71, 100

Conread position: 20-594
Cow position: chr22:12399711-12399134 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 180

Conread position: 21-597
Cow position: chr22:12399542-12398963 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 179

Conread position: 23-596
Cow position: chr22:12431688-12431111 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 91

Conread position: 24-515
Cow position: chr22:12431267-12430776 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 329

Conread position: 24-573
Cow position: chr22:12458471-12457920 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 246

Conread position: 25-386
Cow position: chr22:12399118-12398757 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 234
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 25-508
Cow position: chr22:12431602-12431119 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 47

Conread position: 25-508
Cow position: chr22:12432022-12431539 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 422

Conread position: 25-510
Cow position: chr22:12458638-12458153 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 76

Conread position: 26-363
Cow position: chr22:12430929-12430592 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 217
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 74

Conread position: 26-470
Cow position: chr22:12399201-12398757 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 87

Conread position: 26-479
Cow position: chr22:12418888-12418435 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 240

Conread position: 26-485
Cow position: chr22:12499513-12499972 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 74

Conread position: 26-515
Cow position: chr22:12499429-12499918 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 32-484
Cow position: chr22:11641003-11641455 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 329

Conread position: 35-312
Cow position: chr22:11701417-11701694 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 27

Conread position: 35-484
Cow position: chr22:11666511-11666960 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 68

Conread position: 35-508
Cow position: chr22:12476409-12475936 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 299
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 32, 37

Conread position: 35-517
Cow position: chr22:11701165-11701647 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 229

Conread position: 35-561
Cow position: chr22:12431844-12431315 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 73

Conread position: 35-566
Cow position: chr22:12431172-12430638 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 235

Conread position: 35-573
Cow position: chr22:12476241-12475701 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 89

Conread position: 35-573
Cow position: chr22:12499102-12499642 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 66

Conread position: 35-594
Cow position: chr22:12385688-12385124 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 60

Conread position: 35-635
Cow position: chr22:12431424-12430817 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 8

Conread position: 35-635
Cow position: chr22:12476157-12475550 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 477, 527

Conread position: 35-636
Cow position: chr22:12475989-12475381 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 317

Conread position: 37-512
Cow position: chr22:12419397-12418906 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 275
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 10

Conread position: 39-594
Cow position: chr22:14467959-14468517 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 74

Conread position: 40-309
Cow position: chr22:12385177-12384908 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 170
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 135, 150

Conread position: 40-518
Cow position: chr22:14430555-14431026 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 301
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 77, 72

Conread position: 41-632
Cow position: chr22:14430304-14430902 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 365
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 139, 150

Conread position: 42-485
Cow position: chr22:14442283-14442723 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 274
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 30, 17

Conread position: 42-509
Cow position: chr22:12432341-12431875 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 148

Conread position: 47-507
Cow position: chr22:14442120-14442580 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 282
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 160, 164

Conread position: 56-635
Cow position: chr22:12431907-12431321 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 71-507
Cow position: chr22:11701117-11701553 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 277
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 298, 290

Conread position: 71-517
Cow position: chr22:11666463-11666909 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 287
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 132, 118

Conread position: 71-597
Cow position: chr22:12432480-12431951 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 200

Conread position: 78-573
Cow position: chr22:11640629-11641126 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 36

Conread position: 112-589
Cow position: chr22:12458635-12458155 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 448

Conread position: 114-502
Cow position: chr22:12498845-12499233 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 305

Conread position: 118-512
Cow position: chr22:12385689-12385293 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 240

Conread position: 118-512
Cow position: chr22:12476410-12476016 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 118-573
Cow position: chr22:14441939-14442396 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 284
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 38, 34

Conread position: 118-573
Cow position: chr22:14467954-14468411 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 230

Conread position: 119-486
Cow position: chr22:12544897-12545264 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 228
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 33

Conread position: 119-515
Cow position: chr22:12544645-12545041 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 239
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 46

Conread position: 136-594
Cow position: chr22:12432499-12432038 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 130

Conread position: 143-636
Cow position: chr22:46654017-46654517 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 118

Conread position: 148-517
Cow position: chr22:11640615-11640984 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 33, 40

Conread position: 149-512
Cow position: chr22:12419017-12418654 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 164-560
Cow position: chr22:12544606-12545007 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 244
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 100

Conread position: 184-429
Cow position: chr22:12419335-12419090 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 166
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 22, 11

Conread position: 186-602
Cow position: chr22:14429612-14430029 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 256
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 265, 13

Conread position: 187-512
Cow position: chr22:12385704-12385377 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 291, 0

Conread position: 202-512
Cow position: chr22:12498849-12499158 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 67

Conread position: 209-512
Cow position: chr22:12476486-12476184 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 8

Conread position: 214-596
Cow position: chr22:46654004-46654390 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 247
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 43

Conread position: 226-507
Cow position: chr22:11701104-11701385 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 179
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 42

Conread position: 226-517
Cow position: chr22:11666450-11666740 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 190
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 42

Conread position: 263-508
Cow position: chr22:12458652-12458407 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 90

Conread position: 271-636
Cow position: chr22:46653977-46654349 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 230
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 70

Conread position: 302-594
Cow position: chr22:12399927-12399638 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 191
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 215, 88

Show alignments to all cow chromosomes.