Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-378 |
| Cow position: | chr23:24560441-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 200 |
| Conread position: | 1-385 |
| Cow position: | chr23:25724099-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 97 |
| Conread position: | 1-398 |
| Cow position: | chr23:25660348-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 274 |
| Conread position: | 1-429 |
| Cow position: | chr23:24535848-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 85 |
| Conread position: | 1-493 |
| Cow position: | chr23:24639581-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 1-494 |
| Cow position: | chr23:24626256-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 1-512 |
| Cow position: | chr23:25698627-25698115 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 1-561 |
| Cow position: | chr23:24639497-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 504 |
| Conread position: | 1-594 |
| Cow position: | chr23:24560861-24560264 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 3-512 |
| Cow position: | chr23:24639248-24639757 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 179 |
| Conread position: | 3-523 |
| Cow position: | chr23:25660183-25660702 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 203 |
| Conread position: | 7-493 |
| Cow position: | chr23:24536009-24535523 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 14-512 |
| Cow position: | chr23:25625990-25626487 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 14-596 |
| Cow position: | chr23:24522773-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 16-562 |
| Cow position: | chr23:24560677-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 55 |
| Conread position: | 19-301 |
| Cow position: | chr23:24546946-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 185, 181 |
| Conread position: | 19-372 |
| Cow position: | chr23:24522520-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 20-330 |
| Cow position: | chr23:24626441-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 20-385 |
| Cow position: | chr23:24547029-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 20-429 |
| Cow position: | chr23:24654082-24654485 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 184, 179 |
| Conread position: | 20-508 |
| Cow position: | chr23:24547281-24546793 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 20-527 |
| Cow position: | chr23:24639349-24639854 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 20-573 |
| Cow position: | chr23:24560757-24560202 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 21-477 |
| Cow position: | chr23:24547112-24546655 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 25-524 |
| Cow position: | chr23:25626585-25627088 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 26-508 |
| Cow position: | chr23:24547191-24546709 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-512 |
| Cow position: | chr23:24522678-24522195 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 66 |
| Conread position: | 26-594 |
| Cow position: | chr23:25626169-25626737 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 174 |
| Conread position: | 26-596 |
| Cow position: | chr23:25698685-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 358 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 34-332 |
| Cow position: | chr23:24639783-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 157, 167 |
| Conread position: | 35-508 |
| Cow position: | chr23:24639448-24639921 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-573 |
| Cow position: | chr23:25626094-25626631 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 41-463 |
| Cow position: | chr23:25698502-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 47-631 |
| Cow position: | chr23:25626358-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 49-450 |
| Cow position: | chr23:24522576-24522173 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 49-594 |
| Cow position: | chr23:25660145-25660693 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 59-512 |
| Cow position: | chr23:24535872-24535419 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 423, 11 |
| Conread position: | 67-510 |
| Cow position: | chr23:24536033-24535590 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-464 |
| Cow position: | chr23:24654049-24654441 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 280 |
| Conread position: | 80-469 |
| Cow position: | chr23:25724102-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 283 |
| Conread position: | 115-508 |
| Cow position: | chr23:24639192-24639585 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 118-573 |
| Cow position: | chr23:24547267-24546810 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 229 |
| Conread position: | 124-594 |
| Cow position: | chr23:24560903-24560432 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 132-514 |
| Cow position: | chr23:24654024-24654408 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 137-545 |
| Cow position: | chr23:24626306-24626710 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 127 |
| Conread position: | 159-515 |
| Cow position: | chr23:25724107-25723751 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 109 |
| Conread position: | 164-561 |
| Cow position: | chr23:24547305-24546905 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 34 |
| Conread position: | 195-567 |
| Cow position: | chr23:24536074-24535698 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 202-569 |
| Cow position: | chr23:25626009-25626378 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 207-515 |
| Cow position: | chr23:25724143-25723835 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 150, 141 |
| Conread position: | 214-512 |
| Cow position: | chr23:24522824-24522531 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 37 |
| Conread position: | 217-531 |
| Cow position: | chr23:24626302-24626614 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 219-471 |
| Cow position: | chr23:24521982-24521729 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 233-636 |
| Cow position: | chr23:24547320-24546910 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 119 |
| Conread position: | 303-596 |
| Cow position: | chr23:24547334-24547037 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 209, 259 |
| Conread position: | 307-594 |
| Cow position: | chr23:24522815-24522530 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 272, 28 |
Show alignments to all cow chromosomes.