Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-263 |
| Cow position: | chr28:9290447-9290709 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 185, 194 |
| Conread position: | 1-472 |
| Cow position: | chr28:7757864-7758336 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 1-482 |
| Cow position: | chr28:9299095-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 63 |
| Conread position: | 1-531 |
| Cow position: | chr28:7757780-7758314 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-560 |
| Cow position: | chr28:9253047-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 189 |
| Conread position: | 1-562 |
| Cow position: | chr28:9252962-9253528 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-567 |
| Cow position: | chr28:7757527-7758098 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-594 |
| Cow position: | chr28:7757696-7758293 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 560 |
| Conread position: | 1-636 |
| Cow position: | chr28:7757444-7758087 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 2-327 |
| Cow position: | chr28:7810620-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 3-408 |
| Cow position: | chr28:11333771-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 184 |
| Conread position: | 3-429 |
| Cow position: | chr28:7758438-7758865 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 3-494 |
| Cow position: | chr28:7810462-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 3-558 |
| Cow position: | chr28:9299014-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 513, 179 |
| Conread position: | 3-573 |
| Cow position: | chr28:9298599-9299166 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 3-594 |
| Cow position: | chr28:9252800-9253392 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 63 |
| Conread position: | 3-597 |
| Cow position: | chr28:7758203-7758784 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 109 |
| Conread position: | 3-635 |
| Cow position: | chr28:11334190-11333551 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 188 |
| Conread position: | 7-497 |
| Cow position: | chr28:34696115-34696603 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 7-507 |
| Cow position: | chr28:34696031-34696531 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 317 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 92, 88 |
| Conread position: | 8-381 |
| Cow position: | chr28:9299342-9299711 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 9-573 |
| Cow position: | chr28:7810383-7810942 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 152 |
| Conread position: | 14-571 |
| Cow position: | chr28:9298191-9298748 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 347 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 14-594 |
| Cow position: | chr28:7810307-7810880 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 7 |
| Conread position: | 15-594 |
| Cow position: | chr28:7757376-7757957 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 17-432 |
| Cow position: | chr28:34679597-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 17-594 |
| Cow position: | chr28:9290133-9290707 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 84 |
| Conread position: | 17-635 |
| Cow position: | chr28:7757629-7758254 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 18-561 |
| Cow position: | chr28:9290050-9290590 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 20-316 |
| Cow position: | chr28:9253319-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-492 |
| Cow position: | chr28:11333836-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 238, 246 |
| Conread position: | 26-429 |
| Cow position: | chr28:34673493-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 32-507 |
| Cow position: | chr28:34695972-34696447 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 35-431 |
| Cow position: | chr28:11333906-11333510 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 169 |
| Conread position: | 35-464 |
| Cow position: | chr28:9299284-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 35-481 |
| Cow position: | chr28:7758387-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 78 |
| Conread position: | 35-509 |
| Cow position: | chr28:11333990-11333516 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 35-636 |
| Cow position: | chr28:9298797-9299388 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 477, 18 |
| Conread position: | 39-594 |
| Cow position: | chr28:9289901-9290456 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 53-398 |
| Cow position: | chr28:9299218-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 136 |
| Conread position: | 56-449 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 57-508 |
| Cow position: | chr28:34695829-34696279 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 80-507 |
| Cow position: | chr28:34673379-34673806 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 80-594 |
| Cow position: | chr28:7810288-7810796 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 106 |
| Conread position: | 102-567 |
| Cow position: | chr28:9252566-9253029 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 140-501 |
| Cow position: | chr28:33210228-33210590 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 141-555 |
| Cow position: | chr28:34673356-34673773 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 159-635 |
| Cow position: | chr28:7810283-7810757 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 250 |
| Conread position: | 165-635 |
| Cow position: | chr28:7757357-7757834 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 184-573 |
| Cow position: | chr28:9289802-9290187 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 247, 21 |
| Conread position: | 184-594 |
| Cow position: | chr28:34679598-34679184 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 203-493 |
| Cow position: | chr28:11334242-11333952 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 225-523 |
| Cow position: | chr28:34673356-34673653 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 126, 136 |
| Conread position: | 226-636 |
| Cow position: | chr28:7757334-7757751 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 0 |
| Conread position: | 283-573 |
| Cow position: | chr28:7810248-7810531 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 148, 36 |
| Conread position: | 283-573 |
| Cow position: | chr28:11334246-11333954 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 236, 277 |
Show alignments to all cow chromosomes.