Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-410 |
| Cow position: | chr6:49341020-49341430 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-512 |
| Cow position: | chr6:49395907-49396413 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 1-528 |
| Cow position: | chr6:49340851-49341378 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 505 |
| Conread position: | 1-594 |
| Cow position: | chr6:49340768-49341365 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 16-493 |
| Cow position: | chr6:49396175-49396646 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 56 |
| Conread position: | 17-573 |
| Cow position: | chr6:49396254-49396812 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 349 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 180, 187 |
| Conread position: | 17-636 |
| Cow position: | chr6:49396008-49396628 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 176, 183 |
| Conread position: | 19-262 |
| Cow position: | chr6:49341207-49341449 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 19-594 |
| Cow position: | chr6:49340367-49340945 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 485 |
| Conread position: | 20-512 |
| Cow position: | chr6:49361979-49362459 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 20-566 |
| Cow position: | chr6:49396425-49396974 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 101, 90 |
| Conread position: | 24-486 |
| Cow position: | chr6:49428448-49428910 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 24-635 |
| Cow position: | chr6:49340540-49341158 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 243 |
| Conread position: | 25-339 |
| Cow position: | chr6:49341129-49341443 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 156, 161 |
| Conread position: | 26-573 |
| Cow position: | chr6:49396347-49396896 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 178 |
| Conread position: | 33-463 |
| Cow position: | chr6:49362400-49362818 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 34-409 |
| Cow position: | chr6:49362485-49362848 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 35-432 |
| Cow position: | chr6:49429047-49429444 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 35-485 |
| Cow position: | chr6:49428795-49429245 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 35-486 |
| Cow position: | chr6:49428291-49428742 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 35-486 |
| Cow position: | chr6:49428879-49429330 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 70, 85 |
| Conread position: | 35-487 |
| Cow position: | chr6:49396524-49396976 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 240, 249 |
| Conread position: | 35-494 |
| Cow position: | chr6:49340971-49341430 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 313 |
| Conread position: | 35-507 |
| Cow position: | chr6:49428963-49429435 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 35-594 |
| Cow position: | chr6:49340719-49341281 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 131-507 |
| Cow position: | chr6:49362414-49362778 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 66, 71 |
| Conread position: | 203-408 |
| Cow position: | chr6:39664471-39664266 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 215-483 |
| Cow position: | chr6:49362330-49362598 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 150, 154 |
Show alignments to all cow chromosomes.