Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-351 |
| Cow position: | chr7:18390442-18390793 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 1-512 |
| Cow position: | chr7:1439753-1440262 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 1-568 |
| Cow position: | chr7:42878828-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-594 |
| Cow position: | chr7:3180145-3180742 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 1-594 |
| Cow position: | chr7:42879333-42878735 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 1-610 |
| Cow position: | chr7:3180313-3180923 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 113 |
| Conread position: | 2-365 |
| Cow position: | chr7:1438362-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 3-306 |
| Cow position: | chr7:11600736-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 111, 93 |
| Conread position: | 3-359 |
| Cow position: | chr7:1439921-1440277 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 3-512 |
| Cow position: | chr7:8242829-8243339 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 114 |
| Conread position: | 3-512 |
| Cow position: | chr7:8324931-8325441 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 192 |
| Conread position: | 3-562 |
| Cow position: | chr7:11601239-11600678 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 3-594 |
| Cow position: | chr7:3179979-3180574 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 345 |
| Conread position: | 3-597 |
| Cow position: | chr7:3179728-3180326 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 3-636 |
| Cow position: | chr7:11601156-11600516 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 261 |
| Conread position: | 7-573 |
| Cow position: | chr7:42879241-42878673 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 7-594 |
| Cow position: | chr7:42879073-42878483 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 338 |
| Conread position: | 14-429 |
| Cow position: | chr7:18390372-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 14-430 |
| Cow position: | chr7:1438292-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 149, 8 |
| Conread position: | 14-594 |
| Cow position: | chr7:1439684-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 7 |
| Conread position: | 16-509 |
| Cow position: | chr7:1014401-1014887 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 95, 103 |
| Conread position: | 17-358 |
| Cow position: | chr7:1015152-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 17-560 |
| Cow position: | chr7:42878895-42878349 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 495, 0 |
| Conread position: | 17-636 |
| Cow position: | chr7:1014318-1014938 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 385 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 18-635 |
| Cow position: | chr7:3179659-3180283 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 19-510 |
| Cow position: | chr7:1438212-1438703 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-531 |
| Cow position: | chr7:11600972-11600462 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 329 |
| Conread position: | 19-595 |
| Cow position: | chr7:1014902-1015483 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 88 |
| Conread position: | 20-508 |
| Cow position: | chr7:18390294-18390782 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 20-635 |
| Cow position: | chr7:11601055-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 327 |
| Conread position: | 20-636 |
| Cow position: | chr7:1014735-1015358 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 21-521 |
| Cow position: | chr7:8278064-8278562 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 24-430 |
| Cow position: | chr7:1439859-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 24-512 |
| Cow position: | chr7:18390046-18390534 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 24-573 |
| Cow position: | chr7:42879140-42878589 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 538 |
| Conread position: | 27-507 |
| Cow position: | chr7:18390133-18390612 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 62 |
| Conread position: | 32-512 |
| Cow position: | chr7:8325633-8326113 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 32-562 |
| Cow position: | chr7:8325297-8325830 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 172 |
| Conread position: | 32-596 |
| Cow position: | chr7:8277908-8278474 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 359 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 87, 80 |
| Conread position: | 35-490 |
| Cow position: | chr7:8278163-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 35-508 |
| Cow position: | chr7:8325216-8325689 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 162 |
| Conread position: | 35-573 |
| Cow position: | chr7:8277827-8278367 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 155 |
| Conread position: | 35-594 |
| Cow position: | chr7:3179928-3180490 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 35-594 |
| Cow position: | chr7:18390225-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 38-594 |
| Cow position: | chr7:1014669-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 38-635 |
| Cow position: | chr7:1439452-1440056 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 140 |
| Conread position: | 39-594 |
| Cow position: | chr7:8325556-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 242 |
| Conread position: | 41-512 |
| Cow position: | chr7:11434747-11434283 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 305 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 41-596 |
| Cow position: | chr7:8243204-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 41-636 |
| Cow position: | chr7:8277413-8278015 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 371 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 249, 218 |
| Conread position: | 42-594 |
| Cow position: | chr7:8324887-8325442 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 43-511 |
| Cow position: | chr7:8277583-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 47-596 |
| Cow position: | chr7:8243545-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 331 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 149, 137 |
| Conread position: | 54-512 |
| Cow position: | chr7:8324730-8325188 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 71-573 |
| Cow position: | chr7:1014288-1014786 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 207, 198 |
| Conread position: | 71-596 |
| Cow position: | chr7:8242814-8243343 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 115-404 |
| Cow position: | chr7:11434512-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 256, 239 |
| Conread position: | 119-573 |
| Cow position: | chr7:8277323-8277779 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 145, 161 |
| Conread position: | 139-635 |
| Cow position: | chr7:11434819-11434321 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 165-635 |
| Cow position: | chr7:1438190-1438667 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 170-433 |
| Cow position: | chr7:11434541-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 197-634 |
| Cow position: | chr7:1439443-1439888 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 144 |
| Conread position: | 214-636 |
| Cow position: | chr7:42879370-42878941 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 218-512 |
| Cow position: | chr7:1014267-1014561 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-594 |
| Cow position: | chr7:18389995-18390367 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 292, 337 |
| Conread position: | 226-636 |
| Cow position: | chr7:8324735-8325152 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 92, 45 |
| Conread position: | 292-594 |
| Cow position: | chr7:1014257-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 237, 222 |
| Conread position: | 329-502 |
| Cow position: | chr7:16643334-16643507 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.