Cow genome map


           Conread name:
           Ss1.1-rgul0101_i8.5
        

               Conread position:
               1-351
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               11, 20
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               1-568
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               1-594
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 85
               

               Conread position:
               1-594
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 101
               

               Conread position:
               1-610
               

               Cow position:
               
               

               Alignm length:
               618
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 113
               

               Conread position:
               2-365
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               12, 73
               

               Conread position:
               3-306
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               111, 93
               

               Conread position:
               3-359
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 51
               

               Conread position:
               3-512
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               331
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               33, 114
               

               Conread position:
               3-512
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 192
               

               Conread position:
               3-562
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 16
               

               Conread position:
               3-594
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 345
               

               Conread position:
               3-597
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               3-636
               

               Cow position:
               
               

               Alignm length:
               645
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 261
               

               Conread position:
               7-573
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 65
               

               Conread position:
               7-594
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 338
               

               Conread position:
               14-429
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 57
               

               Conread position:
               14-430
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               273
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               149, 8
               

               Conread position:
               14-594
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               500, 7
               

               Conread position:
               16-509
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               304
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               95, 103
               

               Conread position:
               17-358
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               48, 64
               

               Conread position:
               17-560
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               495, 0
               

               Conread position:
               17-636
               

               Cow position:
               
               

               Alignm length:
               630
               

               Alignm identity:
               385
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               48, 55
               

               Conread position:
               18-635
               

               Cow position:
               
               

               Alignm length:
               630
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 28
               

               Conread position:
               19-510
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               19-531
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 329
               

               Conread position:
               19-595
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 88
               

               Conread position:
               20-508
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 39
               

               Conread position:
               20-635
               

               Cow position:
               
               

               Alignm length:
               627
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 327
               

               Conread position:
               20-636
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 81
               

               Conread position:
               21-521
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 99
               

               Conread position:
               24-430
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               24-512
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 69
               

               Conread position:
               24-573
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               489, 538
               

               Conread position:
               27-507
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 62
               

               Conread position:
               32-512
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 69
               

               Conread position:
               32-562
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 172
               

               Conread position:
               32-596
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               359
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               87, 80
               

               Conread position:
               35-490
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               283
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               84, 77
               

               Conread position:
               35-508
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 162
               

               Conread position:
               35-573
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 155
               

               Conread position:
               35-594
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 165
               

               Conread position:
               35-594
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 60
               

               Conread position:
               38-594
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 76
               

               Conread position:
               38-635
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 140
               

               Conread position:
               39-594
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 242
               

               Conread position:
               41-512
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               305
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               25, 21
               

               Conread position:
               41-596
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               358
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               76, 70
               

               Conread position:
               41-636
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               371
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               249, 218
               

               Conread position:
               42-594
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               43-511
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               47-596
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               331
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               149, 137
               

               Conread position:
               54-512
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               15, 52
               

               Conread position:
               71-573
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               315
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               207, 198
               

               Conread position:
               71-596
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               334
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               35, 24
               

               Conread position:
               115-404
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               256, 239
               

               Conread position:
               119-573
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               300
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               145, 161
               

               Conread position:
               139-635
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               333
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 61
               

               Conread position:
               165-635
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               8, 21
               

               Conread position:
               170-433
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               27, 34
               

               Conread position:
               197-634
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 144
               

               Conread position:
               214-636
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               28, 23
               

               Conread position:
               218-512
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               225-594
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               292, 337
               

               Conread position:
               226-636
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               92, 45
               

               Conread position:
               292-594
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               237, 222
               

               Conread position:
               329-502
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.