Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-393 |
| Cow position: | chr8:46816997-46817390 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-443 |
| Cow position: | chr8:48406761-48406318 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 1-447 |
| Cow position: | chr8:55581270-55581717 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 292 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 1-561 |
| Cow position: | chr8:46816073-46816637 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-562 |
| Cow position: | chr8:46816241-46816806 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-573 |
| Cow position: | chr8:46816325-46816900 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 95 |
| Conread position: | 1-573 |
| Cow position: | chr8:46816745-46817320 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 115 |
| Conread position: | 1-594 |
| Cow position: | chr8:46816577-46817174 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 195 |
| Conread position: | 1-594 |
| Cow position: | chr8:48407266-48406669 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 1-635 |
| Cow position: | chr8:45201046-45201688 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 1-636 |
| Cow position: | chr8:45201214-45201857 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 1-636 |
| Cow position: | chr8:46816157-46816800 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 1-636 |
| Cow position: | chr8:46816493-46817136 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 2-537 |
| Cow position: | chr8:45201467-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 3-594 |
| Cow position: | chr8:45201300-45201895 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 184 |
| Conread position: | 3-596 |
| Cow position: | chr8:48407431-48406834 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 3-597 |
| Cow position: | chr8:48407011-48406413 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 7-461 |
| Cow position: | chr8:46816920-46817374 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 107 |
| Conread position: | 7-493 |
| Cow position: | chr8:48406839-48406353 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 119 |
| Conread position: | 7-636 |
| Cow position: | chr8:46816416-46817052 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 107 |
| Conread position: | 8-594 |
| Cow position: | chr8:46815911-46816502 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 12-635 |
| Cow position: | chr8:45200974-45201604 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 102 |
| Conread position: | 16-512 |
| Cow position: | chr8:48407082-48406586 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 257, 251 |
| Conread position: | 17-594 |
| Cow position: | chr8:45200811-45201391 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 17-636 |
| Cow position: | chr8:46816006-46816632 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 19-556 |
| Cow position: | chr8:55581121-55581661 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 244 |
| Conread position: | 20-545 |
| Cow position: | chr8:46816849-46817377 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 20-580 |
| Cow position: | chr8:55581206-55581769 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 268 |
| Conread position: | 20-594 |
| Cow position: | chr8:55580954-55581531 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 35-397 |
| Cow position: | chr8:48406643-48406281 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 167, 148 |
| Conread position: | 36-562 |
| Cow position: | chr8:55580802-55581331 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 39-596 |
| Cow position: | chr8:48407647-48407086 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 521 |
| Conread position: | 40-635 |
| Cow position: | chr8:55580890-55581492 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 80-528 |
| Cow position: | chr8:6958056-6957608 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 86-635 |
| Cow position: | chr8:45200796-45201352 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 538 |
| Conread position: | 116-635 |
| Cow position: | chr8:48407654-48407128 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 231 |
| Conread position: | 166-635 |
| Cow position: | chr8:45200792-45201268 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 346, 396 |
| Conread position: | 244-636 |
| Cow position: | chr8:45200786-45201185 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 268, 318 |
| Conread position: | 245-447 |
| Cow position: | chr8:6958059-6957857 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-635 |
| Cow position: | chr8:48407658-48407296 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 237, 282 |
Show alignments to all cow chromosomes.