Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-493 |
| Cow position: | chrX:13826920-13826429 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 1-494 |
| Cow position: | chrX:29045148-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-562 |
| Cow position: | chrX:25325307-25324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 204 |
| Conread position: | 1-594 |
| Cow position: | chrX:29045316-29044719 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 1-636 |
| Cow position: | chrX:25309750-25310393 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 3-582 |
| Cow position: | chrX:25310005-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 3-596 |
| Cow position: | chrX:25309920-25310518 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 189 |
| Conread position: | 6-573 |
| Cow position: | chrX:25325049-25324480 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 512, 498 |
| Conread position: | 8-573 |
| Cow position: | chrX:25324794-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 19 |
| Conread position: | 8-594 |
| Cow position: | chrX:29045706-29045139 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 373 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 168, 13 |
| Conread position: | 8-636 |
| Cow position: | chrX:25325383-25324748 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 88 |
| Conread position: | 11-590 |
| Cow position: | chrX:25325211-25324630 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 14-562 |
| Cow position: | chrX:25325124-25324574 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 15-574 |
| Cow position: | chrX:29045217-29044656 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 17-569 |
| Cow position: | chrX:25324870-25324316 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 20-594 |
| Cow position: | chrX:25324951-25324374 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 494, 550 |
| Conread position: | 20-636 |
| Cow position: | chrX:25325539-25324916 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 99 |
| Conread position: | 20-636 |
| Cow position: | chrX:25325707-25325084 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 248 |
| Conread position: | 25-474 |
| Cow position: | chrX:29045858-29045409 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 26-512 |
| Cow position: | chrX:12627576-12628061 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 35-493 |
| Cow position: | chrX:13826717-13826259 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 35-594 |
| Cow position: | chrX:12627418-12627978 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 35-594 |
| Cow position: | chrX:25309701-25310263 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 35-636 |
| Cow position: | chrX:25325776-25325168 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 65-517 |
| Cow position: | chrX:13826939-13826487 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 77-510 |
| Cow position: | chrX:25309659-25310092 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 86-573 |
| Cow position: | chrX:25325893-25325404 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 310 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 88, 95 |
| Conread position: | 131-502 |
| Cow position: | chrX:14181315-14180944 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 351, 341 |
| Conread position: | 191-562 |
| Cow position: | chrX:12627322-12627694 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 98 |
| Conread position: | 202-594 |
| Cow position: | chrX:25309700-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 204-636 |
| Cow position: | chrX:29045361-29044925 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 209-591 |
| Cow position: | chrX:29045758-29045373 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 213-605 |
| Cow position: | chrX:29045838-29045442 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 223-508 |
| Cow position: | chrX:13826949-13826664 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.