Cow genome map
| Conread name: | Ss1.1-risp16_f4.5 |
| Conread position: | 406-573 |
| Cow position: | chr2:45113948-45113776 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 415-575 |
| Cow position: | chr2:19063380-19063546 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 415-575 |
| Cow position: | chr2:70279451-70279289 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 415-576 |
| Cow position: | chr2:64783516-64783684 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 419-575 |
| Cow position: | chr2:19150061-19150223 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 423-575 |
| Cow position: | chr2:59163617-59163773 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 577-767 |
| Cow position: | chr2:73168734-73168925 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 587-729 |
| Cow position: | chr2:74308128-74307982 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 588-781 |
| Cow position: | chr2:64784351-64784540 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 602-777 |
| Cow position: | chr2:60310835-60311009 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 602-781 |
| Cow position: | chr2:376862-377039 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 604-781 |
| Cow position: | chr2:45690218-45690049 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 604-782 |
| Cow position: | chr2:33219222-33219397 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 605-752 |
| Cow position: | chr2:70279220-70279076 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 605-753 |
| Cow position: | chr2:23646391-23646245 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 140, 40 |
| Conread position: | 605-767 |
| Cow position: | chr2:69924250-69924406 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 605-772 |
| Cow position: | chr2:5327797-5327633 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 41 |
| Conread position: | 605-780 |
| Cow position: | chr2:81129987-81129813 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 605-781 |
| Cow position: | chr2:19063612-19063782 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 605-781 |
| Cow position: | chr2:19150290-19150462 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 605-781 |
| Cow position: | chr2:40449547-40449721 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 605-784 |
| Cow position: | chr2:42264654-42264479 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 606-777 |
| Cow position: | chr2:65334559-65334391 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 606-782 |
| Cow position: | chr2:45113705-45113532 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 39 |
| Conread position: | 607-778 |
| Cow position: | chr2:39548852-39549020 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 610-779 |
| Cow position: | chr2:21755229-21755063 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 615-781 |
| Cow position: | chr2:55407221-55407059 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 623-775 |
| Cow position: | chr2:76616916-76616768 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 642-782 |
| Cow position: | chr2:377819-377679 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 644-781 |
| Cow position: | chr2:46492453-46492318 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 648-780 |
| Cow position: | chr2:66454623-66454491 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 94 |
Show alignments to all cow chromosomes.