Cow genome map

Conread name: Ss1.1-rpbfe0123_b23.5

Conread position: 1-163
Cow position: chr17:22551652-22551490 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-185
Cow position: chr17:22473778-22473963 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 143, 0

Conread position: 1-234
Cow position: chr17:22589406-22589173 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 149
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-251
Cow position: chr17:22498783-22498533 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 163
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-269
Cow position: chr17:22552660-22552392 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 182
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 19, 27

Conread position: 1-289
Cow position: chr17:22553080-22552792 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 188
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 185, 195

Conread position: 1-307
Cow position: chr17:22499371-22499065 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-308
Cow position: chr17:22452105-22451798 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 206
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1-308
Cow position: chr17:22589910-22589603 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 197
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-310
Cow position: chr17:22551820-22551511 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 42, 35

Conread position: 1-310
Cow position: chr17:22552072-22551763 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 258, 279

Conread position: 1-310
Cow position: chr17:22552240-22551931 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 279

Conread position: 1-310
Cow position: chr17:22552744-22552435 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 35

Conread position: 1-310
Cow position: chr17:22552996-22552687 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 185, 195

Conread position: 1-310
Cow position: chr17:22589826-22589517 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 301, 296

Conread position: 1-310
Cow position: chr17:22590162-22589853 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 191
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 27

Conread position: 1-310
Cow position: chr17:22590246-22589937 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 195
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr17:22452189-22451878 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 205, 209

Conread position: 1-312
Cow position: chr17:22452357-22452046 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr17:22499287-22498976 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 30

Conread position: 1-320
Cow position: chr17:22499035-22498716 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 112, 102

Conread position: 1-320
Cow position: chr17:22552492-22552173 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position: chr17:22590078-22589759 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1-321
Cow position: chr17:22589994-22589675 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 219
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 19, 27

Conread position: 1-330
Cow position: chr17:22499119-22498791 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 221
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 110, 104

Conread position: 1-336
Cow position: chr17:22473358-22473692 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 216
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 316, 0

Conread position: 3-241
Cow position: chr17:22551734-22551496 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 183, 193

Conread position: 3-258
Cow position: chr17:22473696-22473952 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 228, 0

Conread position: 3-261
Cow position: chr17:22452019-22451761 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 3-265
Cow position: chr17:22589656-22589394 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 27

Conread position: 3-274
Cow position: chr17:22552910-22552639 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 34, 40

Conread position: 3-310
Cow position: chr17:22473444-22473751 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 202
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 100, 106

Conread position: 3-310
Cow position: chr17:22551986-22551679 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 3-310
Cow position: chr17:22552406-22552099 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 33, 40

Conread position: 3-312
Cow position: chr17:22452271-22451962 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 139, 145

Conread position: 3-312
Cow position: chr17:22473276-22473585 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr17:22473612-22473921 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 124, 103

Conread position: 3-312
Cow position: chr17:22498949-22498640 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 185, 195

Conread position: 3-312
Cow position: chr17:22552826-22552517 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 3-320
Cow position: chr17:22552154-22551837 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 183, 193

Conread position: 3-320
Cow position: chr17:22552322-22552005 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 34

Conread position: 3-320
Cow position: chr17:22552574-22552257 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 184, 194

Conread position: 3-333
Cow position: chr17:22451935-22451606 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 205
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 103

Conread position: 3-336
Cow position: chr17:22589572-22589240 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 212
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 39, 33

Conread position: 9-310
Cow position: chr17:22551896-22551595 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 261, 271

Conread position: 27-310
Cow position: chr17:22590304-22590021 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 232, 253

Conread position: 35-268
Cow position: chr17:22553131-22552897 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 7, 66

Conread position: 39-312
Cow position: chr17:22473231-22473501 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 40-310
Cow position: chr17:22499164-22498894 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 40-311
Cow position: chr17:22498828-22498557 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 41-308
Cow position: chr17:22452401-22452134 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 49-312
Cow position: chr17:22499409-22499144 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 5, 0

Conread position: 106-317
Cow position: chr17:22590308-22590098 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 125-312
Cow position: chr17:22452401-22452214 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.