Cow genome map


           Conread name:
           Ss1.1-rpbfe0123_b23.5
        

               Conread position:
               1-224
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-229
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-235
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               210, 199
               

               Conread position:
               1-269
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               208, 191
               

               Conread position:
               1-270
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               125, 105
               

               Conread position:
               1-275
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               27, 19
               

               Conread position:
               1-286
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 276
               

               Conread position:
               1-310
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               212, 0
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               41, 30
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               187, 37
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 0
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               121, 105
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               111, 103
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 30
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               209
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               173, 180
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               89, 96
               

               Conread position:
               1-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-315
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               273, 277
               

               Conread position:
               1-316
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 113
               

               Conread position:
               1-316
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 193
               

               Conread position:
               1-320
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               187, 197
               

               Conread position:
               1-320
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               220
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               187, 197
               

               Conread position:
               1-322
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-331
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               283, 212
               

               Conread position:
               2-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               271, 282
               

               Conread position:
               2-312
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-315
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               259, 266
               

               Conread position:
               3-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               185, 191
               

               Conread position:
               3-265
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-268
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               39, 34
               

               Conread position:
               3-270
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-270
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               36, 27
               

               Conread position:
               3-271
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               19, 25
               

               Conread position:
               3-298
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               201
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-302
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               269, 275
               

               Conread position:
               3-305
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               3-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-310
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               209
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-310
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-310
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               212
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               85, 78
               

               Conread position:
               3-310
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               101, 108
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               284, 280
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               214
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               297, 0
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               110, 104
               

               Conread position:
               3-316
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 0
               

               Conread position:
               3-317
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               3-320
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               217
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               120, 112
               

               Conread position:
               3-320
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               107, 101
               

               Conread position:
               7-320
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               211
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-312
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               23-312
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               32-271
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 73
               

               Conread position:
               33-336
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               34-317
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               79, 71
               

               Conread position:
               40-312
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               41-320
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               42-320
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               47-317
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               97, 101
               

               Conread position:
               48-316
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 59
               

               Conread position:
               53-312
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               40, 13
               

               Conread position:
               63-316
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               81-312
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               192, 60
               
Show alignments to all cow chromosomes.