Cow genome map

Conread name: Ss1.1-rpbfe0123_b23.5

Conread position: 1-239
Cow position: chr22:11641217-11641455 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 108, 116

Conread position: 1-240
Cow position: chr22:12475526-12475287 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-240
Cow position: chr22:12499733-12499972 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-262
Cow position: chr22:14430005-14430266 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 126, 115

Conread position: 1-264
Cow position: chr22:11666470-11666734 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 111

Conread position: 1-268
Cow position: chr22:11701124-11701391 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 172
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 124, 112

Conread position: 1-271
Cow position: chr22:14429669-14429939 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 176
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-271
Cow position: chr22:14430089-14430359 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 173
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 126, 111

Conread position: 1-275
Cow position: chr22:14468082-14468356 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 200, 181

Conread position: 1-282
Cow position: chr22:14429837-14430118 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 182
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 128, 112

Conread position: 1-307
Cow position: chr22:12385477-12385169 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 28

Conread position: 1-309
Cow position: chr22:12476366-12476058 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-310
Cow position: chr22:12431717-12431408 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 200
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr22:11640713-11641024 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr22:11640797-11641108 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 258, 267

Conread position: 1-312
Cow position: chr22:11640965-11641276 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 28

Conread position: 1-312
Cow position: chr22:12385391-12385080 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr22:12385561-12385248 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 102, 112

Conread position: 1-312
Cow position: chr22:12385645-12385332 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 232, 282

Conread position: 1-312
Cow position: chr22:12399317-12399006 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 285

Conread position: 1-312
Cow position: chr22:12399653-12399342 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 1-312
Cow position: chr22:12431801-12431490 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 21, 27

Conread position: 1-312
Cow position: chr22:12431885-12431574 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 208
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 142, 147

Conread position: 1-312
Cow position: chr22:12431969-12431658 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr22:12458417-12458106 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 205
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr22:12498893-12499204 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-312
Cow position: chr22:12499481-12499792 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-316
Cow position: chr22:12399149-12398834 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-316
Cow position: chr22:12399233-12398918 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-316
Cow position: chr22:12399821-12399506 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-316
Cow position: chr22:12499397-12499712 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-317
Cow position: chr22:12399485-12399169 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 1-317
Cow position: chr22:12431633-12431317 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 201
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 28

Conread position: 1-317
Cow position: chr22:12475946-12475630 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 26

Conread position: 1-320
Cow position: chr22:12399065-12398746 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position: chr22:12399899-12399586 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 60, 0

Conread position: 1-320
Cow position: chr22:12432305-12431986 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 176, 198

Conread position: 1-320
Cow position: chr22:12458249-12457930 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 78, 62

Conread position: 1-320
Cow position: chr22:12475862-12475543 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position: chr22:12476030-12475711 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position: chr22:12476114-12475795 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 217
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-339
Cow position: chr22:12431297-12430961 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 226
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 318, 0

Conread position: 2-320
Cow position: chr22:12399568-12399250 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 101

Conread position: 3-256
Cow position: chr22:12419271-12419019 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 33

Conread position: 3-262
Cow position: chr22:12385305-12385046 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-262
Cow position: chr22:14429923-14430182 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 169
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 127, 112

Conread position: 3-268
Cow position: chr22:11640883-11641148 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 123, 110

Conread position: 3-268
Cow position: chr22:12418834-12418569 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 176
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 40, 33

Conread position: 3-268
Cow position: chr22:12430875-12430610 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 3-269
Cow position: chr22:12432219-12431953 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 24

Conread position: 3-269
Cow position: chr22:12432387-12432121 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 3-269
Cow position: chr22:14468000-14468266 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 173
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 3-273
Cow position: chr22:46654458-46654728 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 170
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 27

Conread position: 3-274
Cow position: chr22:46654122-46654393 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 175
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 123, 103

Conread position: 3-303
Cow position: chr22:12418750-12418450 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-303
Cow position: chr22:46654542-46654842 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 3-307
Cow position: chr22:12458499-12458195 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 40, 27

Conread position: 3-308
Cow position: chr22:12458331-12458026 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 208, 203

Conread position: 3-309
Cow position: chr22:12418918-12418612 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 208, 203

Conread position: 3-309
Cow position: chr22:12419002-12418696 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 40, 27

Conread position: 3-310
Cow position: chr22:12431043-12430736 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 3-311
Cow position: chr22:12499651-12499959 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:11640631-11640940 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:11641051-11641360 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 10, 25

Conread position: 3-312
Cow position: chr22:12475608-12475299 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:12475692-12475383 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:12476196-12475887 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:12476280-12475971 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 284, 273

Conread position: 3-312
Cow position: chr22:12498979-12499288 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:12499063-12499372 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 3-312
Cow position: chr22:12499567-12499876 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 287

Conread position: 3-313
Cow position: chr22:12432135-12431825 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 191
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 3-316
Cow position: chr22:12431379-12431066 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 212
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 3-316
Cow position: chr22:12431547-12431234 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 203
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 24

Conread position: 3-316
Cow position: chr22:12458583-12458270 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 3-317
Cow position: chr22:12499315-12499629 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 3-319
Cow position: chr22:12385221-12384905 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 3-320
Cow position: chr22:12399399-12399082 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 3-320
Cow position: chr22:12399735-12399418 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 3-320
Cow position: chr22:12431127-12430810 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 216
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 3-320
Cow position: chr22:12475776-12475459 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-323
Cow position: chr22:11701378-11701697 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 206
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 27

Conread position: 3-327
Cow position: chr22:12458079-12457755 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 17, 31

Conread position: 3-327
Cow position: chr22:46654374-46654699 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 211
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 42

Conread position: 9-310
Cow position: chr22:11641141-11641442 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 196
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 181, 190

Conread position: 14-312
Cow position: chr22:12432460-12432162 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 198, 191

Conread position: 22-271
Cow position: chr22:14467934-14468184 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 181

Conread position: 39-299
Cow position: chr22:11666676-11666936 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 70

Conread position: 40-268
Cow position: chr22:12419318-12419090 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 40-308
Cow position: chr22:12476411-12476143 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 40-312
Cow position: chr22:12498848-12499120 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 40-320
Cow position: chr22:12385690-12385410 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 18, 25

Conread position: 41-320
Cow position: chr22:12431173-12430894 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 42-271
Cow position: chr22:12458124-12457895 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 62, 75

Conread position: 42-309
Cow position: chr22:12432012-12431745 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 42-320
Cow position: chr22:12499270-12499548 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 42-321
Cow position: chr22:12431424-12431145 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 219, 226

Conread position: 42-330
Cow position: chr22:12430920-12430633 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 277, 0

Conread position: 43-312
Cow position: chr22:12458627-12458358 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 48-271
Cow position: chr22:14429800-14430023 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 58-312
Cow position: chr22:14429642-14429896 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 66-312
Cow position: chr22:12399918-12399678 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.