Cow genome map
| Conread name: | Ss1.1-rpbfe0123_b23.5 |
| Conread position: | 1-152 |
| Cow position: | chr23:24560279-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-228 |
| Cow position: | chr23:25660510-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-254 |
| Cow position: | chr23:24626499-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 1-306 |
| Cow position: | chr23:24654140-24654444 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 1-307 |
| Cow position: | chr23:25698633-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 1-310 |
| Cow position: | chr23:25724104-25723795 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 272, 284 |
| Conread position: | 1-312 |
| Cow position: | chr23:24535854-24535543 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr23:24536022-24535711 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr23:24547055-24546744 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 1-312 |
| Cow position: | chr23:24560867-24560556 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr23:25626137-25626448 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr23:25626557-25626865 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-316 |
| Cow position: | chr23:24547307-24546992 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 273 |
| Conread position: | 1-316 |
| Cow position: | chr23:24639239-24639554 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 1-316 |
| Cow position: | chr23:25660258-25660573 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 1-317 |
| Cow position: | chr23:24522545-24522229 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 277, 272 |
| Conread position: | 1-332 |
| Cow position: | chr23:24535938-24535604 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 273, 279 |
| Conread position: | 1-339 |
| Cow position: | chr23:24522710-24522377 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 138, 99 |
| Conread position: | 2-204 |
| Cow position: | chr23:24522376-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 2-272 |
| Cow position: | chr23:24522460-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-309 |
| Cow position: | chr23:25626639-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 184, 193 |
| Conread position: | 2-310 |
| Cow position: | chr23:24639324-24639632 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 65 |
| Conread position: | 3-236 |
| Cow position: | chr23:24546885-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-253 |
| Cow position: | chr23:24639829-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-299 |
| Cow position: | chr23:25626724-25627020 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 115, 99 |
| Conread position: | 3-302 |
| Cow position: | chr23:25698379-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 3-307 |
| Cow position: | chr23:24521953-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 182, 225 |
| Conread position: | 3-307 |
| Cow position: | chr23:24546969-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-307 |
| Cow position: | chr23:24626417-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-307 |
| Cow position: | chr23:25626223-25626527 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-307 |
| Cow position: | chr23:25724018-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 3-310 |
| Cow position: | chr23:24547221-24546914 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 275, 271 |
| Conread position: | 3-310 |
| Cow position: | chr23:24560529-24560222 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr23:24654058-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr23:25626055-25626362 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr23:24560697-24560388 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr23:24626333-24626642 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 275, 270 |
| Conread position: | 3-312 |
| Cow position: | chr23:24639409-24639718 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 3-312 |
| Cow position: | chr23:24639493-24639802 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 256, 265 |
| Conread position: | 3-312 |
| Cow position: | chr23:24639577-24639886 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-315 |
| Cow position: | chr23:25660428-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-316 |
| Cow position: | chr23:24639745-24640058 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-317 |
| Cow position: | chr23:24547137-24546823 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 271 |
| Conread position: | 3-317 |
| Cow position: | chr23:24560613-24560299 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-320 |
| Cow position: | chr23:25698547-25698230 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 224, 239 |
| Conread position: | 3-321 |
| Cow position: | chr23:24560445-24560127 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 3-333 |
| Cow position: | chr23:24639661-24639990 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 314, 0 |
| Conread position: | 14-310 |
| Cow position: | chr23:25625982-25626278 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 247, 266 |
| Conread position: | 15-307 |
| Cow position: | chr23:24535756-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 259, 265 |
| Conread position: | 19-310 |
| Cow position: | chr23:24626264-24626556 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 6, 41 |
| Conread position: | 27-312 |
| Cow position: | chr23:24626201-24626474 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 103, 39 |
| Conread position: | 33-316 |
| Cow position: | chr23:25698685-25698402 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 43-320 |
| Cow position: | chr23:24639197-24639474 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 184, 195 |
| Conread position: | 56-312 |
| Cow position: | chr23:24547336-24547080 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 222, 218 |
| Conread position: | 63-312 |
| Cow position: | chr23:24560889-24560640 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-320 |
| Cow position: | chr23:24522567-24522310 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-320 |
| Cow position: | chr23:24654047-24654291 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-310 |
| Cow position: | chr23:25625961-25626194 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-312 |
| Cow position: | chr23:25724111-25723877 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-312 |
| Cow position: | chr23:24536023-24535795 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-320 |
| Cow position: | chr23:25660173-25660409 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 217, 213 |
| Conread position: | 142-316 |
| Cow position: | chr23:24547334-24547160 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-312 |
| Cow position: | chr23:24654043-24654199 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.