Cow genome map
| Conread name: | Ss1.1-rpbfe0123_b23.5 |
| Conread position: | 1-166 |
| Cow position: | chr25:33156947-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 1-262 |
| Cow position: | chr25:33305380-33305119 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 185, 62 |
| Conread position: | 1-272 |
| Cow position: | chr25:366747-367018 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 203, 209 |
| Conread position: | 1-296 |
| Cow position: | chr25:34433627-34433921 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 1-301 |
| Cow position: | chr25:34714224-34714524 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 187, 195 |
| Conread position: | 1-307 |
| Cow position: | chr25:33298501-33298807 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 1-308 |
| Cow position: | chr25:33299341-33299648 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 1-310 |
| Cow position: | chr25:23420405-23420714 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 272, 279 |
| Conread position: | 1-310 |
| Cow position: | chr25:34433546-34433852 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 112, 61 |
| Conread position: | 1-310 |
| Cow position: | chr25:34769934-34769625 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-311 |
| Cow position: | chr25:23420489-23420799 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr25:33157115-33156804 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 1-312 |
| Cow position: | chr25:33157451-33157140 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr25:34714140-34714451 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 189, 196 |
| Conread position: | 1-312 |
| Cow position: | chr25:34769850-34769539 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-313 |
| Cow position: | chr25:34769514-34769202 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 1-316 |
| Cow position: | chr25:346470-346785 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 1-316 |
| Cow position: | chr25:36800989-36801304 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 105 |
| Conread position: | 1-320 |
| Cow position: | chr25:23420321-23420640 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr25:33127740-33128059 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr25:34769598-34769279 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr25:34770018-34769699 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-321 |
| Cow position: | chr25:34447296-34447616 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-321 |
| Cow position: | chr25:34447548-34447859 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 1-327 |
| Cow position: | chr25:33299509-33299836 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 2-183 |
| Cow position: | chr25:34433043-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 142, 146 |
| Conread position: | 2-262 |
| Cow position: | chr25:36800738-36800998 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 2-272 |
| Cow position: | chr25:18642148-18641875 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 79, 196 |
| Conread position: | 2-307 |
| Cow position: | chr25:33299426-33299731 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 175, 194 |
| Conread position: | 2-307 |
| Cow position: | chr25:34713973-34714278 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 2-308 |
| Cow position: | chr25:33298586-33298892 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 2-310 |
| Cow position: | chr25:34447045-34447353 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-211 |
| Cow position: | chr25:346640-346848 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-223 |
| Cow position: | chr25:23420659-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-228 |
| Cow position: | chr25:33145206-33145431 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 111 |
| Conread position: | 3-250 |
| Cow position: | chr25:33157029-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 3-259 |
| Cow position: | chr25:22235853-22236109 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 119, 111 |
| Conread position: | 3-262 |
| Cow position: | chr25:33299259-33299518 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 3-268 |
| Cow position: | chr25:33299091-33299356 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 99, 103 |
| Conread position: | 3-285 |
| Cow position: | chr25:34447466-34447746 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 3-307 |
| Cow position: | chr25:33299007-33299311 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 3-307 |
| Cow position: | chr25:34446962-34447266 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-307 |
| Cow position: | chr25:34732080-34731776 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 103 |
| Conread position: | 3-307 |
| Cow position: | chr25:36801651-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 267, 277 |
| Conread position: | 3-308 |
| Cow position: | chr25:326521-326826 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 123, 111 |
| Conread position: | 3-308 |
| Cow position: | chr25:33298839-33299144 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 183, 193 |
| Conread position: | 3-308 |
| Cow position: | chr25:33299175-33299480 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 3-308 |
| Cow position: | chr25:36801567-36801872 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 171, 193 |
| Conread position: | 3-310 |
| Cow position: | chr25:33127826-33128133 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 3-310 |
| Cow position: | chr25:33127910-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr25:33144873-33145177 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 3-310 |
| Cow position: | chr25:33298923-33299230 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 112 |
| Conread position: | 3-310 |
| Cow position: | chr25:34447130-34447437 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr25:34447382-34447689 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 122, 113 |
| Conread position: | 3-312 |
| Cow position: | chr25:33157197-33156888 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 3-312 |
| Cow position: | chr25:33157281-33156972 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr25:33157365-33157056 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr25:34769680-34769371 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr25:34769764-34769455 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr25:34770100-34769791 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-317 |
| Cow position: | chr25:34447214-34447528 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 290, 280 |
| Conread position: | 3-317 |
| Cow position: | chr25:36800655-36800969 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 3-321 |
| Cow position: | chr25:34714058-34714376 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 212, 217 |
| Conread position: | 6-229 |
| Cow position: | chr25:327035-327257 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 20-320 |
| Cow position: | chr25:34713823-34714123 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 202, 186 |
| Conread position: | 21-312 |
| Cow position: | chr25:18642213-18641919 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 192 |
| Conread position: | 26-258 |
| Cow position: | chr25:34432983-34433215 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 118, 122 |
| Conread position: | 38-312 |
| Cow position: | chr25:34713925-34714199 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 76 |
| Conread position: | 38-316 |
| Cow position: | chr25:33305425-33305150 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 40-300 |
| Cow position: | chr25:34433501-34433758 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 40-317 |
| Cow position: | chr25:34770147-34769870 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 41-312 |
| Cow position: | chr25:326985-327256 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 42-310 |
| Cow position: | chr25:33157494-33157226 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 42-310 |
| Cow position: | chr25:33298710-33298978 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 49-286 |
| Cow position: | chr25:33145168-33145405 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-300 |
| Cow position: | chr25:34446927-34447175 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-310 |
| Cow position: | chr25:326494-326744 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-316 |
| Cow position: | chr25:33144846-33145099 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 64-310 |
| Cow position: | chr25:326924-327170 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 77-312 |
| Cow position: | chr25:33127732-33127967 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 83-312 |
| Cow position: | chr25:23420319-23420548 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-320 |
| Cow position: | chr25:34432983-34433193 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-312 |
| Cow position: | chr25:34770150-34769959 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 126-312 |
| Cow position: | chr25:33157494-33157308 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.