Cow genome map
| Conread name: | Ss1.1-rpbfe0123_b23.5 |
| Conread position: | 1-240 |
| Cow position: | chr28:9253377-9253617 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 1-248 |
| Cow position: | chr28:7810286-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 90, 105 |
| Conread position: | 1-251 |
| Cow position: | chr28:7810697-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-307 |
| Cow position: | chr28:7757606-7757912 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 1-307 |
| Cow position: | chr28:7758026-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 1-308 |
| Cow position: | chr28:7810529-7810836 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 1-310 |
| Cow position: | chr28:7757438-7757747 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 258, 279 |
| Conread position: | 1-310 |
| Cow position: | chr28:7757774-7758083 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 185, 195 |
| Conread position: | 1-310 |
| Cow position: | chr28:7810613-7810922 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 1-310 |
| Cow position: | chr28:9253041-9253350 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-310 |
| Cow position: | chr28:9253125-9253434 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 277, 273 |
| Conread position: | 1-310 |
| Cow position: | chr28:9290274-9290581 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 1-310 |
| Cow position: | chr28:9290358-9290665 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-310 |
| Cow position: | chr28:9299006-9299300 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 269, 26 |
| Conread position: | 1-316 |
| Cow position: | chr28:7810454-7810760 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 269, 82 |
| Conread position: | 1-317 |
| Cow position: | chr28:11334031-11333715 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 1-320 |
| Cow position: | chr28:7758430-7758749 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 258, 279 |
| Conread position: | 1-320 |
| Cow position: | chr28:7758514-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 105 |
| Conread position: | 1-320 |
| Cow position: | chr28:7810370-7810680 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 1-320 |
| Cow position: | chr28:34679538-34679216 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-328 |
| Cow position: | chr28:34679454-34679121 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 104, 70 |
| Conread position: | 2-256 |
| Cow position: | chr28:9290442-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 2-262 |
| Cow position: | chr28:7757943-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 2-310 |
| Cow position: | chr28:7757691-7757999 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 268, 278 |
| Conread position: | 2-310 |
| Cow position: | chr28:9253294-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 272, 278 |
| Conread position: | 3-262 |
| Cow position: | chr28:7757860-7758119 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 99, 103 |
| Conread position: | 3-262 |
| Cow position: | chr28:9298925-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-272 |
| Cow position: | chr28:34695936-34696205 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 3-286 |
| Cow position: | chr28:34696020-34696303 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 3-308 |
| Cow position: | chr28:9299245-9299550 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 3-310 |
| Cow position: | chr28:7757524-7757831 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr28:9253211-9253518 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 3-312 |
| Cow position: | chr28:34696104-34696413 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 3-316 |
| Cow position: | chr28:11334113-11333800 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 257, 265 |
| Conread position: | 4-307 |
| Cow position: | chr28:9298675-9298977 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 5-310 |
| Cow position: | chr28:9252961-9253266 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 273, 269 |
| Conread position: | 14-271 |
| Cow position: | chr28:34679607-34679354 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 15-312 |
| Cow position: | chr28:34696200-34696497 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 23-316 |
| Cow position: | chr28:11333841-11333548 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 27-307 |
| Cow position: | chr28:9299188-9299465 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 39-310 |
| Cow position: | chr28:7757392-7757663 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-312 |
| Cow position: | chr28:9290231-9290499 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 42-302 |
| Cow position: | chr28:7758387-7758647 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-310 |
| Cow position: | chr28:11334154-11333890 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-312 |
| Cow position: | chr28:33210227-33210477 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-299 |
| Cow position: | chr28:7757334-7757568 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 205, 212 |
| Conread position: | 83-272 |
| Cow position: | chr28:7810284-7810473 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.