Cow genome map
| Conread name: | Ss1.1-rpbfe0123_b23.5 |
| Conread position: | 1-211 |
| Cow position: | chr3:68027534-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 1-234 |
| Cow position: | chr3:68046127-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 1-238 |
| Cow position: | chr3:62742799-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 85, 105 |
| Conread position: | 1-262 |
| Cow position: | chr3:62743198-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 101, 108 |
| Conread position: | 1-271 |
| Cow position: | chr3:68045875-68046145 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 1-310 |
| Cow position: | chr3:62721967-62721658 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-310 |
| Cow position: | chr3:77351302-77350995 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 1-312 |
| Cow position: | chr3:62722135-62721824 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr3:62742384-62742692 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 1-312 |
| Cow position: | chr3:62742552-62742858 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-312 |
| Cow position: | chr3:68045791-68046102 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 126, 114 |
| Conread position: | 1-315 |
| Cow position: | chr3:68027114-68027428 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr3:62722051-62721735 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr3:68027198-68027514 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 147 |
| Conread position: | 1-317 |
| Cow position: | chr3:68045707-68046023 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 280, 272 |
| Conread position: | 1-320 |
| Cow position: | chr3:62722303-62721984 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr3:62743035-62743349 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-320 |
| Cow position: | chr3:68045959-68046278 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-321 |
| Cow position: | chr3:62742301-62742620 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-321 |
| Cow position: | chr3:62742884-62743182 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-322 |
| Cow position: | chr3:62721883-62721562 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-333 |
| Cow position: | chr3:62722219-62721888 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 0 |
| Conread position: | 2-295 |
| Cow position: | chr3:68027451-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-307 |
| Cow position: | chr3:68046044-68046349 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-312 |
| Cow position: | chr3:68027283-68027593 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 271, 280 |
| Conread position: | 2-312 |
| Cow position: | chr3:68045624-68045934 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 271, 285 |
| Conread position: | 2-361 |
| Cow position: | chr3:62742718-62743077 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 168, 31 |
| Conread position: | 3-320 |
| Cow position: | chr3:68027368-68027685 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 255, 265 |
| Conread position: | 5-312 |
| Cow position: | chr3:62743118-62743425 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 38-307 |
| Cow position: | chr3:62742254-62742522 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 38-310 |
| Cow position: | chr3:62742670-62742941 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 214, 79 |
| Conread position: | 39-271 |
| Cow position: | chr3:77350936-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-308 |
| Cow position: | chr3:68027069-68027337 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-320 |
| Cow position: | chr3:62722348-62722068 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 44-312 |
| Cow position: | chr3:68026990-68027257 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 52-312 |
| Cow position: | chr3:16020467-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 66-312 |
| Cow position: | chr3:68045605-68045850 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 108-316 |
| Cow position: | chr3:68045562-68045770 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 121-309 |
| Cow position: | chr3:62742253-62742440 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.