Cow genome map
| Conread name: | Ss1.1-rpbfe0123_b23.5 |
| Conread position: | 1-240 |
| Cow position: | chr7:1015213-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-255 |
| Cow position: | chr7:1438439-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 1-265 |
| Cow position: | chr7:1439913-1440176 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-267 |
| Cow position: | chr7:1014379-1014645 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-307 |
| Cow position: | chr7:1439492-1439800 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 185, 95 |
| Conread position: | 1-310 |
| Cow position: | chr7:1014877-1015186 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr7:3179803-3180114 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 277 |
| Conread position: | 1-312 |
| Cow position: | chr7:3180307-3180618 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr7:8324839-8325150 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 126, 110 |
| Conread position: | 1-312 |
| Cow position: | chr7:8325763-8326074 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 286, 273 |
| Conread position: | 1-312 |
| Cow position: | chr7:18390268-18390579 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr7:18390352-18390663 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 272, 279 |
| Conread position: | 1-312 |
| Cow position: | chr7:42879002-42878691 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr7:42879086-42878775 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 195 |
| Conread position: | 1-312 |
| Cow position: | chr7:42879422-42879111 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-316 |
| Cow position: | chr7:1438355-1438670 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 104 |
| Conread position: | 1-316 |
| Cow position: | chr7:3179971-3180286 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr7:1014793-1015109 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr7:3180391-3180707 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr7:18390016-18390332 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 1-317 |
| Cow position: | chr7:18390100-18390416 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 1-320 |
| Cow position: | chr7:3180055-3180374 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr7:42878834-42878515 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 112, 104 |
| Conread position: | 1-330 |
| Cow position: | chr7:42878582-42878251 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 1-331 |
| Cow position: | chr7:3180475-3180806 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 0 |
| Conread position: | 2-269 |
| Cow position: | chr7:1439997-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-312 |
| Cow position: | chr7:42879169-42878859 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 278 |
| Conread position: | 2-312 |
| Cow position: | chr7:42879253-42878943 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 275 |
| Conread position: | 2-316 |
| Cow position: | chr7:1014296-1014610 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-316 |
| Cow position: | chr7:1439831-1440143 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-262 |
| Cow position: | chr7:1015131-1015390 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-262 |
| Cow position: | chr7:18390186-18390445 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-268 |
| Cow position: | chr7:3180141-3180406 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-271 |
| Cow position: | chr7:18390438-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr7:1014465-1014766 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 3-310 |
| Cow position: | chr7:3180225-3180532 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 192 |
| Conread position: | 3-310 |
| Cow position: | chr7:11601079-11600772 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr7:42878748-42878441 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 3-312 |
| Cow position: | chr7:42878916-42878607 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-317 |
| Cow position: | chr7:3179721-3180035 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 3-317 |
| Cow position: | chr7:42878664-42878350 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 3-320 |
| Cow position: | chr7:1014963-1015280 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-320 |
| Cow position: | chr7:1015047-1015364 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-320 |
| Cow position: | chr7:11600827-11600510 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-320 |
| Cow position: | chr7:11600995-11600678 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 129, 96 |
| Conread position: | 3-326 |
| Cow position: | chr7:11600743-11600420 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 106, 101 |
| Conread position: | 3-333 |
| Cow position: | chr7:1014711-1015040 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 0 |
| Conread position: | 9-330 |
| Cow position: | chr7:11601156-11600837 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 26-262 |
| Cow position: | chr7:8277811-8278047 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 100, 84 |
| Conread position: | 33-275 |
| Cow position: | chr7:8325123-8325365 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 33-290 |
| Cow position: | chr7:8243692-8243950 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 33-312 |
| Cow position: | chr7:1014657-1014936 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-268 |
| Cow position: | chr7:8277735-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 34-272 |
| Cow position: | chr7:8325376-8325614 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 40-312 |
| Cow position: | chr7:8243447-8243719 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 40-320 |
| Cow position: | chr7:11601210-11600930 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 41-262 |
| Cow position: | chr7:1439448-1439667 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 41-275 |
| Cow position: | chr7:8325299-8325533 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 66 |
| Conread position: | 41-312 |
| Cow position: | chr7:3179927-3180198 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-312 |
| Cow position: | chr7:8277658-8277929 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 41-331 |
| Cow position: | chr7:8325887-8326181 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 42-272 |
| Cow position: | chr7:11434508-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 42-275 |
| Cow position: | chr7:8325048-8325281 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 165, 140 |
| Conread position: | 46-316 |
| Cow position: | chr7:11600868-11600598 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-271 |
| Cow position: | chr7:1014273-1014481 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-320 |
| Cow position: | chr7:42879276-42879019 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.