Cow genome map
| Conread name: | Ss1.1-rpbfe0123_b23.5 |
| Conread position: | 1-242 |
| Cow position: | chr8:48407020-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 122, 107 |
| Conread position: | 1-262 |
| Cow position: | chr8:45201712-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-302 |
| Cow position: | chr8:6958058-6957758 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 269 |
| Conread position: | 1-309 |
| Cow position: | chr8:46816319-46816627 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 187, 195 |
| Conread position: | 1-310 |
| Cow position: | chr8:45200956-45201265 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-310 |
| Cow position: | chr8:46815983-46816292 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-310 |
| Cow position: | chr8:48407104-48406795 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-310 |
| Cow position: | chr8:48407188-48406879 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 260, 267 |
| Conread position: | 1-311 |
| Cow position: | chr8:46816991-46817301 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr8:45201376-45201687 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr8:46816151-46816462 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr8:46816403-46816714 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 269, 279 |
| Conread position: | 1-312 |
| Cow position: | chr8:46816571-46816882 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr8:46816823-46817134 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 279 |
| Conread position: | 1-316 |
| Cow position: | chr8:48407524-48407209 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-316 |
| Cow position: | chr8:48407608-48407293 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 1-317 |
| Cow position: | chr8:45201040-45201356 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr8:46816655-46816971 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr8:46817075-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 284 |
| Conread position: | 1-320 |
| Cow position: | chr8:45201208-45201527 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr8:45201292-45201611 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 272, 279 |
| Conread position: | 1-320 |
| Cow position: | chr8:48406684-48406365 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr8:55580844-55581163 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-310 |
| Cow position: | chr8:45201125-45201433 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 3-164 |
| Cow position: | chr8:48406514-48406353 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr8:46816489-46816796 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 3-310 |
| Cow position: | chr8:46816741-46817048 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 212, 217 |
| Conread position: | 3-310 |
| Cow position: | chr8:46816909-46817216 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-310 |
| Cow position: | chr8:55580930-55581237 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr8:45201546-45201855 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr8:46816069-46816378 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr8:46816237-46816546 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr8:55581266-55581575 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-312 |
| Cow position: | chr8:55581350-55581659 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-315 |
| Cow position: | chr8:55581182-55581494 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-317 |
| Cow position: | chr8:48407270-48406956 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 3-317 |
| Cow position: | chr8:48407438-48407124 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 256, 265 |
| Conread position: | 3-320 |
| Cow position: | chr8:48406934-48406617 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 108, 103 |
| Conread position: | 3-320 |
| Cow position: | chr8:55581014-55581331 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-320 |
| Cow position: | chr8:55581098-55581415 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-321 |
| Cow position: | chr8:55581434-55581752 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-330 |
| Cow position: | chr8:45201630-45201956 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 4-312 |
| Cow position: | chr8:46815899-46816210 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 7-320 |
| Cow position: | chr8:48406761-48406450 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 33-316 |
| Cow position: | chr8:48407324-48407041 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 142, 150 |
| Conread position: | 46-312 |
| Cow position: | chr8:48407647-48407381 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 232, 228 |
| Conread position: | 65-310 |
| Cow position: | chr8:45200936-45201181 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-312 |
| Cow position: | chr8:6958059-6957831 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.