Cow genome map

Conread name: Ss1.1-rpfco0101_h20.5.5

Conread position: 1-242
Cow position: chr14:3080037-3079796 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 102, 109

Conread position: 1-286
Cow position: chr14:3100868-3100583 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 175
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-280
Cow position: chr14:25794875-25794598 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 42, 34

Conread position: 3-290
Cow position: chr14:25783819-25784106 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 3-290
Cow position: chr14:25784239-25784526 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 3-300
Cow position: chr14:25783483-25783782 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 279, 0

Conread position: 4-230
Cow position: chr14:25783652-25783878 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 156, 169

Conread position: 4-240
Cow position: chr14:680699-680935 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 4-242
Cow position: chr14:3156122-3156360 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 4-274
Cow position: chr14:25784408-25784678 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 166, 153

Conread position: 4-280
Cow position: chr14:3156206-3156482 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 178
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 4-287
Cow position: chr14:3080118-3079835 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr14:25784072-25784358 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 166, 153

Conread position: 4-290
Cow position: chr14:25795126-25794840 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 182
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 4-301
Cow position: chr14:25836103-25836402 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 87, 93

Conread position: 5-290
Cow position: chr14:680868-681153 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 105

Conread position: 7-280
Cow position: chr14:3100610-3100337 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 180
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 69

Conread position: 10-290
Cow position: chr14:25836781-25837061 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 186
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 87

Conread position: 10-290
Cow position: chr14:25860002-25860282 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 178
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 243, 238

Conread position: 10-290
Cow position: chr14:25877053-25877333 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 178
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 243, 238

Conread position: 11-244
Cow position: chr14:25877558-25877791 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 65, 70

Conread position: 11-287
Cow position: chr14:25860507-25860783 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 70

Conread position: 12-240
Cow position: chr14:3127538-3127310 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 12-241
Cow position: chr14:680371-680600 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 149
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 12-242
Cow position: chr14:3080782-3080552 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 12-243
Cow position: chr14:447569-447800 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 12-245
Cow position: chr14:3080530-3080297 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 156
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr14:3080614-3080336 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr14:3127706-3127428 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr14:3155962-3156240 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 13-240
Cow position: chr14:25859417-25859644 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 150
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 13-242
Cow position: chr14:3079941-3079712 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-242
Cow position: chr14:25876804-25877033 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 85

Conread position: 13-242
Cow position: chr14:25877644-25877873 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 84

Conread position: 13-243
Cow position: chr14:25783577-25783807 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 13-243
Cow position: chr14:25795033-25794803 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-243
Cow position: chr14:25836616-25836846 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 13-243
Cow position: chr14:25895935-25896165 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-270
Cow position: chr14:25794697-25794440 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 163
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-278
Cow position: chr14:25783409-25783674 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 173
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr14:680960-681237 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 97

Conread position: 13-290
Cow position: chr14:3101354-3101078 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 177
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 22

Conread position: 13-290
Cow position: chr14:3127621-3127344 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 178
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr14:3128041-3127764 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr14:25784333-25784610 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr14:25836448-25836725 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr14:25859585-25859862 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 181
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 241, 249

Conread position: 13-290
Cow position: chr14:25860341-25860618 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 176
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 85

Conread position: 13-290
Cow position: chr14:25876636-25876913 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 180
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 85

Conread position: 13-290
Cow position: chr14:25877392-25877669 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 85

Conread position: 13-290
Cow position: chr14:25894846-25895120 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 179
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 67

Conread position: 13-300
Cow position: chr14:25783997-25784286 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 189
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 269, 0

Conread position: 13-300
Cow position: chr14:25795201-25794912 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 186
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 267, 0

Conread position: 13-300
Cow position: chr14:25836868-25837157 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 193
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 262, 0

Conread position: 13-300
Cow position: chr14:25859333-25859622 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 185
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 263, 0

Conread position: 13-300
Cow position: chr14:25860173-25860462 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 182
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 279, 0

Conread position: 13-300
Cow position: chr14:25860425-25860714 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 184
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 79

Conread position: 13-300
Cow position: chr14:25876384-25876673 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 189
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 67

Conread position: 13-300
Cow position: chr14:25876468-25876757 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 245, 251

Conread position: 13-300
Cow position: chr14:25876720-25877009 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 78

Conread position: 13-300
Cow position: chr14:25877224-25877513 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 187
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 279, 0

Conread position: 13-300
Cow position: chr14:25877476-25877765 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 190
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 85, 79

Conread position: 13-300
Cow position: chr14:25895599-25895888 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 181
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 269, 0

Conread position: 13-301
Cow position: chr14:25836196-25836486 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 86, 81

Conread position: 13-301
Cow position: chr14:25859837-25860127 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 185
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 78, 85

Conread position: 13-301
Cow position: chr14:25859921-25860211 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 81

Conread position: 13-301
Cow position: chr14:25876972-25877262 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 191
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 75, 81

Conread position: 13-303
Cow position: chr14:25910980-25911272 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 187
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 269, 0

Conread position: 13-304
Cow position: chr14:3156047-3156340 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 238, 231

Conread position: 13-305
Cow position: chr14:25836364-25836658 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 279, 0

Conread position: 13-326
Cow position: chr14:25795285-25794973 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 203
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 267, 283

Conread position: 14-290
Cow position: chr14:3128208-3127932 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 17-300
Cow position: chr14:25784169-25784454 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 186
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 265, 0

Conread position: 21-300
Cow position: chr14:25836288-25836569 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 247, 0

Conread position: 21-300
Cow position: chr14:25860265-25860546 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 62

Conread position: 22-248
Cow position: chr14:25910821-25911047 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-244
Cow position: chr14:25836964-25837183 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 66, 73

Conread position: 25-290
Cow position: chr14:25836544-25836809 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 51, 56

Conread position: 25-290
Cow position: chr14:25895443-25895708 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 56

Conread position: 25-300
Cow position: chr14:25859681-25859958 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 145, 153

Conread position: 25-304
Cow position: chr14:3127777-3127496 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 257, 0

Conread position: 28-290
Cow position: chr14:25894942-25895204 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 27

Conread position: 35-287
Cow position: chr14:3155412-3155664 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 35-300
Cow position: chr14:25836050-25836317 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 247, 0

Conread position: 35-300
Cow position: chr14:25860111-25860378 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 247, 0

Conread position: 35-300
Cow position: chr14:25877162-25877429 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 257, 0

Conread position: 35-304
Cow position: chr14:3155901-3156172 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 244, 0

Conread position: 41-211
Cow position: chr14:420736-420906 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 56-300
Cow position: chr14:25835987-25836233 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 41

Conread position: 58-290
Cow position: chr14:25783370-25783602 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 25

Show alignments to all cow chromosomes.