Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 3-290 |
| Cow position: | chr17:22499004-22498717 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-304 |
| Cow position: | chr17:22589963-22589660 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 3-304 |
| Cow position: | chr17:22590047-22589744 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 4-230 |
| Cow position: | chr17:22451905-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 4-239 |
| Cow position: | chr17:22499171-22498936 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-278 |
| Cow position: | chr17:22452409-22452135 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-287 |
| Cow position: | chr17:22551956-22551673 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-289 |
| Cow position: | chr17:22473306-22473593 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 247, 237 |
| Conread position: | 4-290 |
| Cow position: | chr17:22452157-22451871 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr17:22553048-22552762 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-292 |
| Cow position: | chr17:22589458-22589170 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 4-304 |
| Cow position: | chr17:22552208-22551906 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 90, 94 |
| Conread position: | 4-304 |
| Cow position: | chr17:22589626-22589324 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 236, 258 |
| Conread position: | 4-304 |
| Cow position: | chr17:22590130-22589828 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-304 |
| Cow position: | chr17:22590214-22589912 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-318 |
| Cow position: | chr17:22499087-22498774 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 300, 291 |
| Conread position: | 9-303 |
| Cow position: | chr17:22589705-22589409 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 159, 143 |
| Conread position: | 9-304 |
| Cow position: | chr17:22589873-22589576 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 154, 143 |
| Conread position: | 10-285 |
| Cow position: | chr17:22473648-22473923 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-290 |
| Cow position: | chr17:22473564-22473844 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-286 |
| Cow position: | chr17:22590290-22590016 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 142, 134 |
| Conread position: | 12-289 |
| Cow position: | chr17:22499415-22499136 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 12-290 |
| Cow position: | chr17:22552284-22552006 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-301 |
| Cow position: | chr17:22452233-22451942 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 254, 248 |
| Conread position: | 13-212 |
| Cow position: | chr17:22551695-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 13-213 |
| Cow position: | chr17:22498742-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-278 |
| Cow position: | chr17:22551779-22551514 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-285 |
| Cow position: | chr17:22452316-22452044 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 13-290 |
| Cow position: | chr17:22498910-22498633 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr17:22499246-22498969 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr17:22552451-22552174 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 13-290 |
| Cow position: | chr17:22552535-22552258 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr17:22552703-22552426 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-291 |
| Cow position: | chr17:22498826-22498548 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-291 |
| Cow position: | chr17:22552871-22552592 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 13-302 |
| Cow position: | chr17:22552031-22551740 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-303 |
| Cow position: | chr17:22552955-22552663 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-304 |
| Cow position: | chr17:22551863-22551570 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-304 |
| Cow position: | chr17:22552115-22551822 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 13-304 |
| Cow position: | chr17:22552367-22552074 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-304 |
| Cow position: | chr17:22552787-22552494 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-306 |
| Cow position: | chr17:22499330-22499035 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-306 |
| Cow position: | chr17:22552619-22552324 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 14-300 |
| Cow position: | chr17:22553122-22552834 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 268, 0 |
| Conread position: | 21-301 |
| Cow position: | chr17:22589525-22589243 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 146, 125 |
| Conread position: | 22-304 |
| Cow position: | chr17:22589776-22589492 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 25-290 |
| Cow position: | chr17:22473411-22473676 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 226, 218 |
| Conread position: | 44-345 |
| Cow position: | chr17:22473262-22473562 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 78-290 |
| Cow position: | chr17:22553142-22552930 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 80-290 |
| Cow position: | chr17:22590306-22590096 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-290 |
| Cow position: | chr17:22452409-22452207 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.