Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 1-290 |
| Cow position: | chr19:23614325-23614615 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-302 |
| Cow position: | chr19:23649944-23650247 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 281, 0 |
| Conread position: | 1-304 |
| Cow position: | chr19:23614745-23615051 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2-290 |
| Cow position: | chr19:23649693-23649981 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 143, 152 |
| Conread position: | 2-300 |
| Cow position: | chr19:23597252-23597552 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 2-302 |
| Cow position: | chr19:23613571-23613873 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 3-304 |
| Cow position: | chr19:23613404-23613707 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 244, 251 |
| Conread position: | 4-242 |
| Cow position: | chr19:14948326-14948088 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-243 |
| Cow position: | chr19:14940801-14941040 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-244 |
| Cow position: | chr19:20677924-20678164 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 99, 83 |
| Conread position: | 4-244 |
| Cow position: | chr19:20678344-20678584 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 4-287 |
| Cow position: | chr19:23650031-23650314 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-289 |
| Cow position: | chr19:23613993-23614280 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-289 |
| Cow position: | chr19:23614833-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr19:20678260-20678546 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr19:23613825-23614111 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 88, 82 |
| Conread position: | 4-290 |
| Cow position: | chr19:23614497-23614783 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 160, 148 |
| Conread position: | 4-290 |
| Cow position: | chr19:23614581-23614867 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 247, 240 |
| Conread position: | 4-290 |
| Cow position: | chr19:23649443-23649729 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 4-290 |
| Cow position: | chr19:23649611-23649897 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 225, 234 |
| Conread position: | 4-290 |
| Cow position: | chr19:23650115-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 4-298 |
| Cow position: | chr19:23650199-23650494 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-300 |
| Cow position: | chr19:20677672-20677970 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-301 |
| Cow position: | chr19:20677752-20678055 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 4-301 |
| Cow position: | chr19:23614161-23614460 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-302 |
| Cow position: | chr19:23649527-23649827 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 4-303 |
| Cow position: | chr19:14959185-14958890 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 278, 66 |
| Conread position: | 4-307 |
| Cow position: | chr19:43570325-43570030 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 281, 47 |
| Conread position: | 5-300 |
| Cow position: | chr19:23614078-23614375 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 247, 239 |
| Conread position: | 7-290 |
| Cow position: | chr19:14960415-14960134 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 262, 0 |
| Conread position: | 9-300 |
| Cow position: | chr19:23613914-23614207 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 10-337 |
| Cow position: | chr19:20635486-20635159 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 241, 234 |
| Conread position: | 11-287 |
| Cow position: | chr19:14960077-14959801 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-287 |
| Cow position: | chr19:23597430-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-289 |
| Cow position: | chr19:14940137-14940414 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr19:14940389-14940667 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 12-290 |
| Cow position: | chr19:14940557-14940835 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr19:14959588-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr19:23597178-23597456 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr19:23613665-23613943 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr19:43570243-43569965 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 241, 234 |
| Conread position: | 12-303 |
| Cow position: | chr19:23649787-23650080 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 12-325 |
| Cow position: | chr19:14940053-14940365 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 264, 291 |
| Conread position: | 13-209 |
| Cow position: | chr19:23597515-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-285 |
| Cow position: | chr19:14959098-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-288 |
| Cow position: | chr19:14948484-14948208 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 267, 83 |
| Conread position: | 13-289 |
| Cow position: | chr19:23597347-23597625 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 13-290 |
| Cow position: | chr19:14940222-14940499 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr19:14940474-14940751 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr19:14948401-14948124 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr19:20677597-20677874 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr19:23597095-23597372 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr19:23613750-23614027 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-291 |
| Cow position: | chr19:43570158-43569880 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-300 |
| Cow position: | chr19:20635399-20635110 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 148, 155 |
| Conread position: | 13-300 |
| Cow position: | chr19:23614422-23614711 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 148, 138 |
| Conread position: | 13-300 |
| Cow position: | chr19:43569990-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-301 |
| Cow position: | chr19:23597014-23597301 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 13-302 |
| Cow position: | chr19:23649872-23650163 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 13-307 |
| Cow position: | chr19:23613498-23613794 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 14-301 |
| Cow position: | chr19:43570398-43570120 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 268, 5 |
| Conread position: | 16-301 |
| Cow position: | chr19:14959257-14958976 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 266, 135 |
| Conread position: | 17-290 |
| Cow position: | chr19:14940730-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-290 |
| Cow position: | chr19:14960154-14959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-290 |
| Cow position: | chr19:14940650-14940919 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-290 |
| Cow position: | chr19:20635556-20635290 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 154, 128 |
| Conread position: | 25-274 |
| Cow position: | chr19:20635303-20635054 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-304 |
| Cow position: | chr19:20635639-20635358 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 37-287 |
| Cow position: | chr19:14939993-14940244 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 37-302 |
| Cow position: | chr19:14959646-14959380 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 37-302 |
| Cow position: | chr19:23613354-23613621 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 43-300 |
| Cow position: | chr19:20678215-20678474 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 58-278 |
| Cow position: | chr19:14960448-14960228 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 22 |
Show alignments to all cow chromosomes.