Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 3-249 |
| Cow position: | chr2:78754566-78754808 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 3-290 |
| Cow position: | chr2:78754970-78755257 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-291 |
| Cow position: | chr2:78755722-78756010 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 3-302 |
| Cow position: | chr2:78755974-78756276 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 3-304 |
| Cow position: | chr2:78755054-78755356 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 4-243 |
| Cow position: | chr2:82799665-82799904 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 4-287 |
| Cow position: | chr2:86465153-86465436 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-288 |
| Cow position: | chr2:5874875-5874589 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 4-290 |
| Cow position: | chr2:78754887-78755173 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-313 |
| Cow position: | chr2:78755390-78755699 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 301, 123 |
| Conread position: | 4-325 |
| Cow position: | chr2:78755223-78755540 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 114 |
| Conread position: | 9-278 |
| Cow position: | chr2:78756065-78756332 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 12-290 |
| Cow position: | chr2:82799505-82799783 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 12-290 |
| Cow position: | chr2:82799757-82800035 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr2:82799841-82800119 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr2:82800093-82800371 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-197 |
| Cow position: | chr2:82800262-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-230 |
| Cow position: | chr2:5874614-5874397 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-242 |
| Cow position: | chr2:82799590-82799819 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-280 |
| Cow position: | chr2:48689477-48689211 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 13-280 |
| Cow position: | chr2:78754492-78754755 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 13-288 |
| Cow position: | chr2:5874698-5874421 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 13-290 |
| Cow position: | chr2:78754410-78754685 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 13-304 |
| Cow position: | chr2:78754812-78755105 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-307 |
| Cow position: | chr2:78755816-78756113 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 91, 82 |
| Conread position: | 16-303 |
| Cow position: | chr2:48689391-48689102 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 229, 257 |
| Conread position: | 20-288 |
| Cow position: | chr2:78754165-78754435 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 25-288 |
| Cow position: | chr2:5874770-5874505 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 25-290 |
| Cow position: | chr2:82799938-82800203 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-290 |
| Cow position: | chr2:82800022-82800287 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-300 |
| Cow position: | chr2:78755663-78755937 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 142, 124 |
| Conread position: | 36-290 |
| Cow position: | chr2:82799447-82799699 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 215, 11 |
| Conread position: | 45-290 |
| Cow position: | chr2:86465950-86466195 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 143, 139 |
Show alignments to all cow chromosomes.