Cow genome map


           Conread name:
           Ss1.1-rpfco0101_h20.5.5
        

               Conread position:
               1-289
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               84, 74
               

               Conread position:
               2-290
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               201
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               74, 84
               

               Conread position:
               3-300
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               276, 0
               

               Conread position:
               3-302
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               276, 0
               

               Conread position:
               3-304
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               271, 0
               

               Conread position:
               3-306
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               279, 0
               

               Conread position:
               4-287
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               157, 147
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               190, 185
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               26, 32
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               277, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               144, 150
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-293
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-293
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               278, 0
               

               Conread position:
               4-293
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               107, 101
               

               Conread position:
               4-300
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               282, 0
               

               Conread position:
               4-300
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               282, 0
               

               Conread position:
               4-302
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 148
               

               Conread position:
               4-302
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               279, 0
               

               Conread position:
               4-302
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               288, 0
               

               Conread position:
               4-302
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               278, 0
               

               Conread position:
               4-302
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               275, 0
               

               Conread position:
               4-304
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               226, 238
               

               Conread position:
               4-307
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               288, 0
               

               Conread position:
               4-324
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               215
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               278, 299
               

               Conread position:
               4-325
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               279, 299
               

               Conread position:
               4-355
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               288, 299
               

               Conread position:
               5-300
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               154, 143
               

               Conread position:
               9-269
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               249, 0
               

               Conread position:
               10-209
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 77
               

               Conread position:
               10-239
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               10-290
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-290
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-290
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-300
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               12-240
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               87, 72
               

               Conread position:
               12-241
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               154, 163
               

               Conread position:
               12-271
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               154, 163
               

               Conread position:
               12-289
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               74, 81
               

               Conread position:
               12-289
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               266, 261
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               99, 93
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               30, 70
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               135, 152
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-302
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               282, 0
               

               Conread position:
               13-271
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               246, 230
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               63, 76
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               138, 151
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               138, 149
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-290
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-300
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               267, 0
               

               Conread position:
               13-300
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               267, 0
               

               Conread position:
               13-300
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               266, 0
               

               Conread position:
               13-301
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               263, 0
               

               Conread position:
               13-304
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               218, 239
               

               Conread position:
               13-304
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               278, 0
               

               Conread position:
               13-304
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               77, 66
               

               Conread position:
               13-324
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               291, 279
               

               Conread position:
               14-241
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-300
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               268, 0
               

               Conread position:
               22-245
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               22-300
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               231, 222
               

               Conread position:
               25-288
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               48, 55
               

               Conread position:
               27-324
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               255, 89
               

               Conread position:
               28-290
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               30-300
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               246, 0
               

               Conread position:
               37-290
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               58-290
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               98-290
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.