Cow genome map

Conread name: Ss1.1-rpfco0101_h20.5.5

Conread position: 1-289
Cow position: chr22:12458052-12457762 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 84, 74

Conread position: 2-290
Cow position: chr22:12399203-12398915 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 74, 84

Conread position: 3-300
Cow position: chr22:12499512-12499811 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 276, 0

Conread position: 3-302
Cow position: chr22:12475747-12475446 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 276, 0

Conread position: 3-304
Cow position: chr22:12476083-12475780 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 271, 0

Conread position: 3-306
Cow position: chr22:12499176-12499481 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 279, 0

Conread position: 4-287
Cow position: chr22:12418972-12418689 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12385275-12384989 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 157, 147

Conread position: 4-290
Cow position: chr22:12399537-12399251 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12399621-12399335 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12399705-12399419 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12418804-12418518 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12431265-12430979 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12431601-12431315 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 190, 185

Conread position: 4-290
Cow position: chr22:12431769-12431483 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 26, 32

Conread position: 4-290
Cow position: chr22:12458469-12458182 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 277, 0

Conread position: 4-290
Cow position: chr22:12458553-12458267 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12475578-12475292 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12475662-12475376 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12476166-12475880 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12499093-12499379 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 144, 150

Conread position: 4-290
Cow position: chr22:12499597-12499883 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr22:12499681-12499967 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 188
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 4-293
Cow position: chr22:12399033-12398744 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-293
Cow position: chr22:12431013-12430722 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 278, 0

Conread position: 4-293
Cow position: chr22:12431517-12431226 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 107, 101

Conread position: 4-300
Cow position: chr22:12476250-12475952 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 282, 0

Conread position: 4-300
Cow position: chr22:12499009-12499307 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 203
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 282, 0

Conread position: 4-302
Cow position: chr22:12399369-12399069 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 4-302
Cow position: chr22:12418888-12418588 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 199
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 279, 0

Conread position: 4-302
Cow position: chr22:12475914-12475614 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 288, 0

Conread position: 4-302
Cow position: chr22:12476334-12476034 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 278, 0

Conread position: 4-302
Cow position: chr22:12498925-12499225 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 275, 0

Conread position: 4-304
Cow position: chr22:12431181-12430879 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 226, 238

Conread position: 4-307
Cow position: chr22:12499345-12499650 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 288, 0

Conread position: 4-324
Cow position: chr22:12499429-12499748 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 278, 299

Conread position: 4-325
Cow position: chr22:12476418-12476099 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 279, 299

Conread position: 4-355
Cow position: chr22:12458217-12457868 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 225
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 288, 299

Conread position: 5-300
Cow position: chr22:12431432-12431135 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 154, 143

Conread position: 9-269
Cow position: chr22:12430840-12430579 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 167
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 249, 0

Conread position: 10-209
Cow position: chr22:11641255-11641454 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 77

Conread position: 10-239
Cow position: chr22:46654326-46654555 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 68

Conread position: 10-290
Cow position: chr22:11666592-11666872 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 175
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 10-290
Cow position: chr22:12430923-12430643 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 10-290
Cow position: chr22:12431343-12431063 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 10-300
Cow position: chr22:46654158-46654450 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 68

Conread position: 12-240
Cow position: chr22:11640921-11641149 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 87, 72

Conread position: 12-241
Cow position: chr22:11666678-11666907 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 154, 163

Conread position: 12-271
Cow position: chr22:11701416-11701675 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 154, 163

Conread position: 12-289
Cow position: chr22:11641089-11641368 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 81

Conread position: 12-289
Cow position: chr22:11641173-11641452 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 266, 261

Conread position: 12-290
Cow position: chr22:11640753-11641031 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 99, 93

Conread position: 12-290
Cow position: chr22:11640837-11641115 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr22:11701332-11701610 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr22:12385437-12385157 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 70

Conread position: 12-290
Cow position: chr22:12385605-12385325 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 135, 152

Conread position: 12-290
Cow position: chr22:12399109-12398831 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr22:12458377-12458099 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 12-302
Cow position: chr22:12385183-12384892 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 190
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 282, 0

Conread position: 13-271
Cow position: chr22:12431676-12431418 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 246, 230

Conread position: 13-290
Cow position: chr22:12399276-12398999 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 63, 76

Conread position: 13-290
Cow position: chr22:12399780-12399503 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr22:12431088-12430811 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 138, 151

Conread position: 13-290
Cow position: chr22:12431844-12431567 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr22:12432264-12431987 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 138, 149

Conread position: 13-290
Cow position: chr22:12475989-12475712 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr22:12499270-12499547 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 13-300
Cow position: chr22:12432432-12432143 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 187
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 267, 0

Conread position: 13-300
Cow position: chr22:12458292-12458003 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 267, 0

Conread position: 13-300
Cow position: chr22:12498850-12499139 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 266, 0

Conread position: 13-301
Cow position: chr22:11641006-11641296 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 189
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 263, 0

Conread position: 13-304
Cow position: chr22:12385688-12385393 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 195
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 218, 239

Conread position: 13-304
Cow position: chr22:12399444-12399151 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 278, 0

Conread position: 13-304
Cow position: chr22:12458124-12457831 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 77, 66

Conread position: 13-324
Cow position: chr22:12475821-12475511 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 291, 279

Conread position: 14-241
Cow position: chr22:12419315-12419088 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 14-300
Cow position: chr22:12458627-12458339 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 268, 0

Conread position: 22-245
Cow position: chr22:14429803-14430026 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 149
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 22-300
Cow position: chr22:46654002-46654282 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 183
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 231, 222

Conread position: 25-288
Cow position: chr22:12432336-12432073 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 48, 55

Conread position: 27-324
Cow position: chr22:12399928-12399638 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 191
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 255, 89

Conread position: 28-290
Cow position: chr22:12431915-12431651 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 30-300
Cow position: chr22:12432499-12432227 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 170
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 246, 0

Conread position: 37-290
Cow position: chr22:12419023-12418770 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 58-290
Cow position: chr22:12399819-12399587 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 98-290
Cow position: chr22:12419315-12419123 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.