Cow genome map

Conread name: Ss1.1-rpfco0101_h20.5.5

Conread position: 1-290
Cow position: chr23:24547194-24546905 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 4-208
Cow position: chr23:24654172-24654376 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 4-247
Cow position: chr23:24560331-24560089 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 226, 188

Conread position: 4-248
Cow position: chr23:25660290-25660534 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 86, 73

Conread position: 4-273
Cow position: chr23:25698349-25698080 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 39

Conread position: 4-288
Cow position: chr23:24535738-24535452 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 278, 0

Conread position: 4-289
Cow position: chr23:24560583-24560298 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr23:24522513-24522227 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 164, 146

Conread position: 4-290
Cow position: chr23:24522597-24522311 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 181
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 32

Conread position: 4-290
Cow position: chr23:24547107-24546821 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr23:24560415-24560129 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr23:24639355-24639641 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 187
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr23:25626754-25627040 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 82, 72

Conread position: 4-290
Cow position: chr23:25660206-25660492 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 185, 180

Conread position: 4-290
Cow position: chr23:25724072-25723786 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 4-293
Cow position: chr23:24639271-24639562 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 182
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 278, 0

Conread position: 4-300
Cow position: chr23:24560499-24560201 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 0

Conread position: 4-300
Cow position: chr23:25626586-25626884 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 157, 148

Conread position: 4-304
Cow position: chr23:24626363-24626665 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 151, 145

Conread position: 8-280
Cow position: chr23:25698681-25698409 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-292
Cow position: chr23:25626005-25626290 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 183
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 281, 0

Conread position: 11-224
Cow position: chr23:24626538-24626749 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 143, 135

Conread position: 11-302
Cow position: chr23:24560660-24560367 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 265, 0

Conread position: 12-274
Cow position: chr23:25660466-25660728 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr23:24639447-24639725 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 13-240
Cow position: chr23:24535813-24535586 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-243
Cow position: chr23:24522420-24522190 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 13-243
Cow position: chr23:24546930-24546700 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-279
Cow position: chr23:25723979-25723713 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 13-280
Cow position: chr23:25698592-25698325 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 173
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-286
Cow position: chr23:25626679-25626952 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-287
Cow position: chr23:24639616-24639890 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 13-289
Cow position: chr23:25626094-25626372 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 263, 0

Conread position: 13-290
Cow position: chr23:24535897-24535620 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr23:24547014-24546737 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr23:24547266-24546989 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr23:24639700-24639977 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 180
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr23:25626346-25626620 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 179
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 175, 200

Conread position: 13-291
Cow position: chr23:24626456-24626734 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 13-300
Cow position: chr23:24639532-24639821 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 192
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 269, 0

Conread position: 13-300
Cow position: chr23:24639784-24640073 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 272, 0

Conread position: 13-324
Cow position: chr23:25626262-25626572 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 199
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 258, 265

Conread position: 16-287
Cow position: chr23:25660385-25660657 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 18-278
Cow position: chr23:24654102-24654362 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 233, 226

Conread position: 18-290
Cow position: chr23:24535976-24535704 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 73, 80

Conread position: 21-233
Cow position: chr23:25626186-25626398 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 24-280
Cow position: chr23:24521986-24521730 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 216, 5

Conread position: 28-304
Cow position: chr23:24626303-24626581 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 251, 0

Conread position: 35-290
Cow position: chr23:24654034-24654290 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 43-290
Cow position: chr23:24547320-24547073 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 21

Conread position: 49-290
Cow position: chr23:25724111-25723870 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 15

Conread position: 56-290
Cow position: chr23:24560699-24560465 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 56-300
Cow position: chr23:25660174-25660420 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 207, 0

Conread position: 112-325
Cow position: chr23:24536050-24535838 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 171, 0

Show alignments to all cow chromosomes.