Cow genome map

Conread name: Ss1.1-rpfco0101_h20.5.5

Conread position: 1-286
Cow position: chr25:33299034-33299319 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-290
Cow position: chr25:33157086-33156797 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 190
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-302
Cow position: chr25:33298698-33299001 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 78

Conread position: 1-304
Cow position: chr25:33157170-33156865 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 275, 0

Conread position: 4-196
Cow position: chr25:33299625-33299817 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 4-240
Cow position: chr25:33299121-33299357 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 4-247
Cow position: chr25:34447580-34447815 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 4-278
Cow position: chr25:326551-326825 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 4-281
Cow position: chr25:23420605-23420882 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 4-282
Cow position: chr25:34732050-34731772 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 184
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 83

Conread position: 4-287
Cow position: chr25:346502-346785 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 132, 138

Conread position: 4-287
Cow position: chr25:33127940-33128223 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 163, 141

Conread position: 4-288
Cow position: chr25:33144903-33145186 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 184
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 264, 135

Conread position: 4-290
Cow position: chr25:23420353-23420639 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33157251-33156965 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33157419-33157133 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33157503-33157217 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33298533-33298819 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 50, 55

Conread position: 4-290
Cow position: chr25:33298785-33299071 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33298869-33299155 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33298953-33299239 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33299289-33299575 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 186
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 69, 76

Conread position: 4-290
Cow position: chr25:33299457-33299743 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:33305744-33305461 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 257, 24

Conread position: 4-290
Cow position: chr25:34447328-34447614 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 175, 149

Conread position: 4-290
Cow position: chr25:34732470-34732182 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 186
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 161, 153

Conread position: 4-290
Cow position: chr25:36800853-36801139 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position: chr25:36800937-36801223 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 4-292
Cow position: chr25:326977-327266 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 59

Conread position: 4-294
Cow position: chr25:36801681-36801971 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 4-307
Cow position: chr25:34769650-34769345 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 278, 0

Conread position: 4-308
Cow position: chr25:33305181-33304879 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 139, 64

Conread position: 5-289
Cow position: chr25:36800686-36800970 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 5-290
Cow position: chr25:36801430-36801715 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 89

Conread position: 5-329
Cow position: chr25:33305909-33305589 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 280, 91

Conread position: 6-290
Cow position: chr25:36801515-36801799 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 6-300
Cow position: chr25:33305346-33305055 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 276, 29

Conread position: 7-289
Cow position: chr25:23420524-23420808 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 0

Conread position: 11-290
Cow position: chr25:33127863-33128142 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 12-278
Cow position: chr25:366787-367053 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 12-290
Cow position: chr25:34769978-34769700 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 12-300
Cow position: chr25:34447000-34447290 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 264, 0

Conread position: 12-300
Cow position: chr25:34769810-34769520 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 270, 0

Conread position: 12-301
Cow position: chr25:25652250-25652541 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 68

Conread position: 12-302
Cow position: chr25:36800525-36800817 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 189
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 268, 0

Conread position: 12-304
Cow position: chr25:33305422-33305131 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 16

Conread position: 12-304
Cow position: chr25:34447084-34447378 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 270, 0

Conread position: 12-306
Cow position: chr25:34713844-34714140 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 192
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 26

Conread position: 13-229
Cow position: chr25:22235976-22236192 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-230
Cow position: chr25:34763225-34763442 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 146
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 13-241
Cow position: chr25:36801030-36801258 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 145, 152

Conread position: 13-243
Cow position: chr25:34769473-34769243 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 13-262
Cow position: chr25:33306318-33306075 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 13-280
Cow position: chr25:34714265-34714532 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 161, 168

Conread position: 13-287
Cow position: chr25:33298626-33298900 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 13-287
Cow position: chr25:33306068-33305795 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 85, 123

Conread position: 13-287
Cow position: chr25:34714181-34714455 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 173
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 243, 252

Conread position: 13-289
Cow position: chr25:34447253-34447529 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 144, 138

Conread position: 13-289
Cow position: chr25:34769557-34769279 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 267, 0

Conread position: 13-290
Cow position: chr25:33127781-33128058 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr25:33299214-33299491 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 85, 80

Conread position: 13-290
Cow position: chr25:34769725-34769448 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 13-290
Cow position: chr25:34770145-34769868 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 37, 24

Conread position: 13-290
Cow position: chr25:36801606-36801883 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 66

Conread position: 13-294
Cow position: chr25:33299550-33299831 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 60, 67

Conread position: 13-300
Cow position: chr25:23420446-23420735 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 269, 0

Conread position: 13-300
Cow position: chr25:33299382-33299671 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 66

Conread position: 13-304
Cow position: chr25:34447421-34447712 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 83, 73

Conread position: 13-304
Cow position: chr25:34769893-34769600 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 269, 0

Conread position: 17-290
Cow position: chr25:346431-346704 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 179
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 16

Conread position: 18-243
Cow position: chr25:18642103-18641875 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 75

Conread position: 21-221
Cow position: chr25:34762900-34763100 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 21-287
Cow position: chr25:33145169-33145435 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-288
Cow position: chr25:33298470-33298735 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 257, 0

Conread position: 26-233
Cow position: chr25:414703-414497 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 29-242
Cow position: chr25:346610-346824 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 70

Conread position: 35-287
Cow position: chr25:34446939-34447191 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 35-300
Cow position: chr25:33306377-33306119 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 247, 35

Conread position: 36-290
Cow position: chr25:36800633-36800887 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 41-290
Cow position: chr25:33145024-33145270 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 206, 11

Conread position: 47-290
Cow position: chr25:414761-414524 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 48-287
Cow position: chr25:33144863-33145099 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 174, 0

Conread position: 58-290
Cow position: chr25:22235853-22236085 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 154
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 58-290
Cow position: chr25:33145122-33145354 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 62-290
Cow position: chr25:23420327-23420555 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 91-290
Cow position: chr25:34770151-34769952 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 139-290
Cow position: chr25:23420320-23420471 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.