Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 1-221 |
| Cow position: | chr28:7810726-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-288 |
| Cow position: | chr28:7810483-7810763 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 167, 51 |
| Conread position: | 2-289 |
| Cow position: | chr28:7758544-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 252, 235 |
| Conread position: | 2-290 |
| Cow position: | chr28:9290140-9290423 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-233 |
| Cow position: | chr28:9298954-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-288 |
| Cow position: | chr28:7757973-7758260 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 3-290 |
| Cow position: | chr28:7758461-7758748 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-210 |
| Cow position: | chr28:9253409-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-259 |
| Cow position: | chr28:33210366-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 4-274 |
| Cow position: | chr28:7757722-7757992 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-280 |
| Cow position: | chr28:7758058-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-288 |
| Cow position: | chr28:9298704-9298989 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 4-289 |
| Cow position: | chr28:9253241-9253528 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-289 |
| Cow position: | chr28:9253325-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 4-290 |
| Cow position: | chr28:7757470-7757756 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr28:7757638-7757924 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 4-290 |
| Cow position: | chr28:7757806-7758092 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr28:7810402-7810679 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 248, 126 |
| Conread position: | 4-300 |
| Cow position: | chr28:7757554-7757852 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 4-328 |
| Cow position: | chr28:7810561-7810883 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 299 |
| Conread position: | 4-328 |
| Cow position: | chr28:9253073-9253397 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 299 |
| Conread position: | 5-290 |
| Cow position: | chr28:11333662-11333383 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 7-290 |
| Cow position: | chr28:9298874-9299155 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 9-240 |
| Cow position: | chr28:9290477-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-288 |
| Cow position: | chr28:11333910-11333629 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 10-208 |
| Cow position: | chr28:9299365-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 12-290 |
| Cow position: | chr28:7757394-7757672 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 109, 122 |
| Conread position: | 13-287 |
| Cow position: | chr28:9290067-9290337 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 13-288 |
| Cow position: | chr28:7758387-7758664 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 262, 0 |
| Conread position: | 13-288 |
| Cow position: | chr28:7810327-7810595 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 259, 198 |
| Conread position: | 13-289 |
| Cow position: | chr28:34673502-34673780 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 13-290 |
| Cow position: | chr28:9252913-9253191 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 13-290 |
| Cow position: | chr28:33210291-33210569 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 13-298 |
| Cow position: | chr28:9299284-9299571 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 13-300 |
| Cow position: | chr28:7757899-7758188 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 13-300 |
| Cow position: | chr28:7810252-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 13-300 |
| Cow position: | chr28:9253166-9253455 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-306 |
| Cow position: | chr28:11333990-11333695 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 13-329 |
| Cow position: | chr28:9298797-9299112 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 269, 22 |
| Conread position: | 14-300 |
| Cow position: | chr28:11334073-11333785 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 15-299 |
| Cow position: | chr28:9290400-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 264, 64 |
| Conread position: | 15-300 |
| Cow position: | chr28:7810656-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 17-301 |
| Cow position: | chr28:34695811-34696097 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 177, 167 |
| Conread position: | 24-287 |
| Cow position: | chr28:34696322-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 28-304 |
| Cow position: | chr28:9298561-9298837 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 29-300 |
| Cow position: | chr28:9253014-9253287 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 31-289 |
| Cow position: | chr28:9299218-9299478 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 35-325 |
| Cow position: | chr28:7758325-7758614 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 247, 268 |
| Conread position: | 36-304 |
| Cow position: | chr28:7757334-7757604 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 37-290 |
| Cow position: | chr28:33210231-33210484 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 115-290 |
| Cow position: | chr28:9299218-9299393 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.