Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 4-247 |
| Cow position: | chr3:68027482-68027725 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-280 |
| Cow position: | chr3:62721851-62721575 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr3:62722271-62721985 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr3:68045655-68045941 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 4-290 |
| Cow position: | chr3:68045991-68046277 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-291 |
| Cow position: | chr3:62722103-62721816 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-300 |
| Cow position: | chr3:62742665-62742962 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 219, 81 |
| Conread position: | 4-304 |
| Cow position: | chr3:62722187-62721885 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 4-352 |
| Cow position: | chr3:62743146-62743497 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 309, 300 |
| Conread position: | 7-331 |
| Cow position: | chr3:77350942-77350619 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 8-197 |
| Cow position: | chr3:62721763-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-290 |
| Cow position: | chr3:62721927-62721649 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-300 |
| Cow position: | chr3:68045831-68046121 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 12-302 |
| Cow position: | chr3:68045915-68046207 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 12-307 |
| Cow position: | chr3:68027322-68027619 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 13-210 |
| Cow position: | chr3:62742840-62743033 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 157 |
| Conread position: | 13-233 |
| Cow position: | chr3:62742756-62742977 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 13-274 |
| Cow position: | chr3:77350849-77350591 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 244, 161 |
| Conread position: | 13-278 |
| Cow position: | chr3:68027155-68027420 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-289 |
| Cow position: | chr3:68046084-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 13-290 |
| Cow position: | chr3:62722010-62721733 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 146, 139 |
| Conread position: | 13-290 |
| Cow position: | chr3:62743076-62743348 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 13-290 |
| Cow position: | chr3:68027407-68027684 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-302 |
| Cow position: | chr3:62742425-62742713 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 269, 216 |
| Conread position: | 13-325 |
| Cow position: | chr3:68045748-68046059 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 291, 278 |
| Conread position: | 13-335 |
| Cow position: | chr3:62742258-62742579 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 291, 95 |
| Conread position: | 18-302 |
| Cow position: | chr3:68027076-68027362 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 21-300 |
| Cow position: | chr3:68027247-68027528 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 23-300 |
| Cow position: | chr3:68045592-68045869 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 36-304 |
| Cow position: | chr3:62722323-62722053 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 52-290 |
| Cow position: | chr3:62743031-62743264 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.