Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 1-239 |
| Cow position: | chr7:1440025-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 1-243 |
| Cow position: | chr7:18390297-18390539 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-290 |
| Cow position: | chr7:1014990-1015279 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 256, 246 |
| Conread position: | 2-240 |
| Cow position: | chr7:3180589-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 2-290 |
| Cow position: | chr7:18390130-18390418 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-293 |
| Cow position: | chr7:42878719-42878427 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 3-302 |
| Cow position: | chr7:42878887-42878586 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 4-244 |
| Cow position: | chr7:3180255-3180495 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 158, 147 |
| Conread position: | 4-259 |
| Cow position: | chr7:1438471-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 158, 149 |
| Conread position: | 4-278 |
| Cow position: | chr7:42878550-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 4-281 |
| Cow position: | chr7:1439524-1439803 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 170, 75 |
| Conread position: | 4-288 |
| Cow position: | chr7:11601133-11600847 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 4-288 |
| Cow position: | chr7:18390216-18390502 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-289 |
| Cow position: | chr7:42878634-42878349 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 157, 147 |
| Conread position: | 4-290 |
| Cow position: | chr7:1015077-1015363 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr7:11600797-11600511 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr7:11601049-11600763 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr7:42878802-42878516 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr7:42879138-42878852 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 4-290 |
| Cow position: | chr7:42879222-42878936 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-300 |
| Cow position: | chr7:42878970-42878672 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 227, 233 |
| Conread position: | 4-305 |
| Cow position: | chr7:1439695-1439995 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 66 |
| Conread position: | 4-313 |
| Cow position: | chr7:1438387-1438699 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 4-325 |
| Cow position: | chr7:3179919-3180239 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 285, 298 |
| Conread position: | 11-290 |
| Cow position: | chr7:11600958-11600679 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 104, 121 |
| Conread position: | 11-298 |
| Cow position: | chr7:18390475-18390764 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 12-244 |
| Cow position: | chr7:8324963-8325195 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 12-290 |
| Cow position: | chr7:3180095-3180373 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 245, 235 |
| Conread position: | 12-306 |
| Cow position: | chr7:11600705-11600414 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 13-246 |
| Cow position: | chr7:8277911-8278144 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 13-246 |
| Cow position: | chr7:11434508-11434275 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 13-278 |
| Cow position: | chr7:1014336-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-287 |
| Cow position: | chr7:1015170-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-289 |
| Cow position: | chr7:1014834-1015110 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 244, 234 |
| Conread position: | 13-290 |
| Cow position: | chr7:3179760-3180037 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr7:3180012-3180289 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 13-290 |
| Cow position: | chr7:3180348-3180625 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 244, 234 |
| Conread position: | 13-290 |
| Cow position: | chr7:3180516-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr7:8277659-8277936 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-290 |
| Cow position: | chr7:8325804-8326081 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 13-290 |
| Cow position: | chr7:18390393-18390670 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-293 |
| Cow position: | chr7:1014918-1015200 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-302 |
| Cow position: | chr7:1014750-1015041 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-327 |
| Cow position: | chr7:1439954-1440266 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 13-330 |
| Cow position: | chr7:1438312-1438629 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 14-304 |
| Cow position: | chr7:42879296-42879004 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 15-290 |
| Cow position: | chr7:1014668-1014943 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-290 |
| Cow position: | chr7:1439451-1439729 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 243, 136 |
| Conread position: | 17-290 |
| Cow position: | chr7:11601204-11600931 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-306 |
| Cow position: | chr7:11600868-11600577 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 19-290 |
| Cow position: | chr7:1014510-1014775 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 25-240 |
| Cow position: | chr7:18390573-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-244 |
| Cow position: | chr7:8325312-8325531 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 25-246 |
| Cow position: | chr7:8278175-8278396 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 25-290 |
| Cow position: | chr7:8324892-8325157 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 26-287 |
| Cow position: | chr7:8243798-8244057 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 37-290 |
| Cow position: | chr7:8324820-8325073 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 43-300 |
| Cow position: | chr7:8325750-8326009 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 58-287 |
| Cow position: | chr7:3179721-3179950 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-300 |
| Cow position: | chr7:42879333-42879092 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 65 |
Show alignments to all cow chromosomes.