Cow genome map
| Conread name: | Ss1.1-rpfco0101_h20.5.5 |
| Conread position: | 1-213 |
| Cow position: | chrX:29044873-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-290 |
| Cow position: | chrX:25310025-25310314 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-302 |
| Cow position: | chrX:29045293-29044990 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 291, 0 |
| Conread position: | 1-303 |
| Cow position: | chrX:29045041-29044737 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 0 |
| Conread position: | 1-306 |
| Cow position: | chrX:25324697-25324389 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 6, 152 |
| Conread position: | 1-307 |
| Cow position: | chrX:25324780-25324472 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 1-307 |
| Cow position: | chrX:29045608-29045303 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 178, 145 |
| Conread position: | 2-290 |
| Cow position: | chrX:29044956-29044668 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-300 |
| Cow position: | chrX:25309943-25310242 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 4-280 |
| Cow position: | chrX:25324441-25324169 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25309860-25310146 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25324861-25324575 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25324945-25324659 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25325029-25324743 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25325281-25324995 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25325365-25325079 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chrX:25325533-25325247 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 241 |
| Conread position: | 4-300 |
| Cow position: | chrX:25309776-25310074 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 4-304 |
| Cow position: | chrX:29045122-29044820 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 4-324 |
| Cow position: | chrX:25310112-25310431 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 278, 299 |
| Conread position: | 7-300 |
| Cow position: | chrX:25325866-25325571 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 8-287 |
| Cow position: | chrX:29045202-29044923 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-280 |
| Cow position: | chrX:29045684-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 222, 244 |
| Conread position: | 9-290 |
| Cow position: | chrX:25325696-25325415 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-302 |
| Cow position: | chrX:25325108-25324813 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 13-290 |
| Cow position: | chrX:25310205-25310482 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 13-302 |
| Cow position: | chrX:25325188-25324897 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-304 |
| Cow position: | chrX:25324516-25324225 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-304 |
| Cow position: | chrX:25325440-25325147 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 13-304 |
| Cow position: | chrX:25325776-25325483 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-307 |
| Cow position: | chrX:25310289-25310585 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 253, 231 |
| Conread position: | 14-303 |
| Cow position: | chrX:29045361-29045073 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 268, 29 |
| Conread position: | 21-287 |
| Cow position: | chrX:25309709-25309975 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-293 |
| Cow position: | chrX:29045756-29045482 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 28-304 |
| Cow position: | chrX:25325593-25325315 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 35-304 |
| Cow position: | chrX:29045826-29045555 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 125 |
| Conread position: | 63-290 |
| Cow position: | chrX:25309667-25309894 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 10, 27 |
Show alignments to all cow chromosomes.