Cow genome map


           Conread name:
           Ss1.1-rpfco0139_p3.5
        

               Conread position:
               100-297
               

               Cow position:
               chr11:67155272-67155073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               128, 14
               

               Conread position:
               115-305
               

               Cow position:
               chr11:29764000-29763815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               118-314
               

               Cow position:
               chr11:18884837-18884638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               67, 173
               

               Conread position:
               122-384
               

               Cow position:
               chr11:75711725-75711449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               74, 57
               

               Conread position:
               123-299
               

               Cow position:
               chr11:46779289-46779468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               124-297
               

               Cow position:
               chr11:73468323-73468496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               103, 144
               

               Conread position:
               125-278
               

               Cow position:
               chr11:2843257-2843098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               12, 48
               

               Conread position:
               133-273
               

               Cow position:
               chr11:66607195-66607335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               94, 103
               

               Conread position:
               133-297
               

               Cow position:
               chr11:3086462-3086627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 56
               

               Conread position:
               133-299
               

               Cow position:
               chr11:3262047-3261880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               133-435
               

               Cow position:
               chr11:34455389-34455076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               97, 56
               

               Conread position:
               147-442
               

               Cow position:
               chr11:59038254-59038548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               85, 131
               
Show alignments to all cow chromosomes.