Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-210 |
| Cow position: | chr1:28722640-28722431 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 161, 112 |
| Conread position: | 1-210 |
| Cow position: | chr1:38414655-38414451 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 156, 48 |
| Conread position: | 1-217 |
| Cow position: | chr1:40953558-40953344 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 1-217 |
| Cow position: | chr1:42290241-42290037 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 1-217 |
| Cow position: | chr1:72656830-72656616 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 162, 89 |
| Conread position: | 1-217 |
| Cow position: | chr1:89809772-89809993 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 86, 119 |
| Conread position: | 1-224 |
| Cow position: | chr1:18406342-18406572 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 132 |
| Conread position: | 1-305 |
| Cow position: | chr1:30027693-30027985 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 162, 94 |
| Conread position: | 1-345 |
| Cow position: | chr1:102555934-102555605 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 163, 32 |
| Conread position: | 1-367 |
| Cow position: | chr1:67902570-67902944 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 161, 94 |
| Conread position: | 1-385 |
| Cow position: | chr1:98661443-98661814 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 1-423 |
| Cow position: | chr1:1461479-1461885 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 129 |
| Conread position: | 1-423 |
| Cow position: | chr1:13645579-13645181 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 189, 85 |
| Conread position: | 1-442 |
| Cow position: | chr1:89899854-89900263 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 54 |
| Conread position: | 1-443 |
| Cow position: | chr1:72120000-72119578 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 109 |
| Conread position: | 1-453 |
| Cow position: | chr1:97123680-97123262 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 54 |
| Conread position: | 1-454 |
| Cow position: | chr1:42176548-42176960 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 178, 74 |
| Conread position: | 1-461 |
| Cow position: | chr1:5318608-5318176 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 162, 55 |
| Conread position: | 1-461 |
| Cow position: | chr1:57567798-57567343 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 128 |
| Conread position: | 1-468 |
| Cow position: | chr1:82918810-82919247 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 81 |
| Conread position: | 1-468 |
| Cow position: | chr1:88635223-88634792 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 85 |
| Conread position: | 1-474 |
| Cow position: | chr1:55323674-55324137 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 58 |
| Conread position: | 1-477 |
| Cow position: | chr1:58201756-58202224 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 162, 12 |
| Conread position: | 1-481 |
| Cow position: | chr1:79637087-79637564 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 1-487 |
| Cow position: | chr1:31396265-31395772 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 1-488 |
| Cow position: | chr1:33711909-33711440 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 29 |
| Conread position: | 1-489 |
| Cow position: | chr1:6708242-6708751 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 1-489 |
| Cow position: | chr1:11292256-11292765 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 122 |
| Conread position: | 1-489 |
| Cow position: | chr1:28801578-28802031 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 126 |
| Conread position: | 1-489 |
| Cow position: | chr1:71562726-71563228 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 1-489 |
| Cow position: | chr1:80359317-80359826 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 1-489 |
| Cow position: | chr1:86548282-86548782 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 1-492 |
| Cow position: | chr1:18244540-18245015 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 1-492 |
| Cow position: | chr1:21087265-21086745 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 1-492 |
| Cow position: | chr1:56163178-56162669 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 330 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 1-492 |
| Cow position: | chr1:82652485-82651983 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 108 |
| Conread position: | 2-210 |
| Cow position: | chr1:62853981-62854188 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 161, 10 |
| Conread position: | 2-216 |
| Cow position: | chr1:45097555-45097359 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 2-454 |
| Cow position: | chr1:8824908-8824474 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-454 |
| Cow position: | chr1:76545694-76546131 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-454 |
| Cow position: | chr1:76623099-76623537 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-454 |
| Cow position: | chr1:86699372-86699813 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 2-468 |
| Cow position: | chr1:101858135-101858566 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 2-474 |
| Cow position: | chr1:63501308-63500846 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 2-483 |
| Cow position: | chr1:13253589-13254050 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 2-486 |
| Cow position: | chr1:72187024-72187501 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 2-486 |
| Cow position: | chr1:88130607-88130133 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 2-487 |
| Cow position: | chr1:79335956-79336425 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 2-487 |
| Cow position: | chr1:89740396-89740864 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 104 |
| Conread position: | 3-473 |
| Cow position: | chr1:58179920-58180361 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 112, 20 |
| Conread position: | 4-425 |
| Cow position: | chr1:101149689-101149289 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 127 |
| Conread position: | 6-486 |
| Cow position: | chr1:93854362-93853892 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 10 |
| Conread position: | 6-489 |
| Cow position: | chr1:8027299-8027803 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 7-473 |
| Cow position: | chr1:72981109-72980671 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 98 |
| Conread position: | 7-486 |
| Cow position: | chr1:17941969-17942453 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 123 |
| Conread position: | 7-486 |
| Cow position: | chr1:33550765-33550294 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 7-486 |
| Cow position: | chr1:100597540-100598011 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 8-190 |
| Cow position: | chr1:33895520-33895337 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 123 |
| Conread position: | 8-202 |
| Cow position: | chr1:87207570-87207776 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 8-217 |
| Cow position: | chr1:69536751-69536536 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 51, 206 |
| Conread position: | 8-225 |
| Cow position: | chr1:69766305-69766097 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 157, 39 |
| Conread position: | 8-242 |
| Cow position: | chr1:89770841-89771070 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 8-260 |
| Cow position: | chr1:68607707-68607960 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-317 |
| Cow position: | chr1:17036717-17037020 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 8-317 |
| Cow position: | chr1:55276645-55276948 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 101 |
| Conread position: | 8-317 |
| Cow position: | chr1:56489680-56489378 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 8-373 |
| Cow position: | chr1:97226859-97227221 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 106 |
| Conread position: | 8-379 |
| Cow position: | chr1:28872918-28872557 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-424 |
| Cow position: | chr1:99995252-99995689 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-454 |
| Cow position: | chr1:25180190-25180624 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 8-456 |
| Cow position: | chr1:102435186-102435621 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 8-457 |
| Cow position: | chr1:86609042-86608608 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 155, 78 |
| Conread position: | 8-461 |
| Cow position: | chr1:34689183-34688758 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 33 |
| Conread position: | 8-464 |
| Cow position: | chr1:25549904-25549461 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-465 |
| Cow position: | chr1:69402833-69402389 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 119 |
| Conread position: | 8-466 |
| Cow position: | chr1:49974350-49974792 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 88 |
| Conread position: | 8-466 |
| Cow position: | chr1:85881583-85881147 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 55 |
| Conread position: | 8-468 |
| Cow position: | chr1:55775995-55775552 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 121 |
| Conread position: | 8-470 |
| Cow position: | chr1:69922622-69923072 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-473 |
| Cow position: | chr1:25887304-25887739 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 8-473 |
| Cow position: | chr1:62244807-62245262 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 8-477 |
| Cow position: | chr1:85780937-85781389 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 123 |
| Conread position: | 8-486 |
| Cow position: | chr1:3386166-3386626 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 11 |
| Conread position: | 8-486 |
| Cow position: | chr1:5501816-5501348 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr1:22000115-22000578 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 8-486 |
| Cow position: | chr1:63605942-63606413 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr1:79457126-79457597 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-487 |
| Cow position: | chr1:20828730-20828255 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 176, 101 |
| Conread position: | 8-487 |
| Cow position: | chr1:40053196-40052701 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 157, 86 |
| Conread position: | 8-487 |
| Cow position: | chr1:89425431-89424932 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr1:8554169-8553666 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 115 |
| Conread position: | 8-489 |
| Cow position: | chr1:18880544-18881044 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr1:33851120-33850599 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 160, 115 |
| Conread position: | 8-489 |
| Cow position: | chr1:39543612-39543115 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr1:43019966-43019468 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 106 |
| Conread position: | 8-489 |
| Cow position: | chr1:53198634-53198132 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 8-489 |
| Cow position: | chr1:59210293-59210795 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr1:61308843-61308355 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 157, 107 |
| Conread position: | 8-489 |
| Cow position: | chr1:62925454-62924971 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-489 |
| Cow position: | chr1:79920886-79921385 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr1:82564345-82563854 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 82 |
| Conread position: | 8-489 |
| Cow position: | chr1:85791532-85791039 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 45 |
| Conread position: | 8-489 |
| Cow position: | chr1:88759408-88758905 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr1:91718793-91719299 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 117, 201 |
| Conread position: | 8-489 |
| Cow position: | chr1:91898842-91898351 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 103 |
| Conread position: | 8-492 |
| Cow position: | chr1:17012895-17013392 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-492 |
| Cow position: | chr1:40513656-40514121 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 72 |
| Conread position: | 8-492 |
| Cow position: | chr1:40684849-40685351 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 86 |
| Conread position: | 8-492 |
| Cow position: | chr1:57367291-57367768 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-492 |
| Cow position: | chr1:67286331-67285875 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 9-317 |
| Cow position: | chr1:67835298-67835593 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 156, 98 |
| Conread position: | 9-486 |
| Cow position: | chr1:73071178-73071653 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 82 |
| Conread position: | 12-212 |
| Cow position: | chr1:59674326-59674126 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 150, 117 |
| Conread position: | 12-453 |
| Cow position: | chr1:87244636-87244217 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 115 |
| Conread position: | 12-466 |
| Cow position: | chr1:56194094-56194536 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 117 |
| Conread position: | 12-473 |
| Cow position: | chr1:42736294-42735847 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-476 |
| Cow position: | chr1:69287721-69288159 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 151, 40 |
| Conread position: | 12-478 |
| Cow position: | chr1:29904228-29904681 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 103, 69 |
| Conread position: | 12-486 |
| Cow position: | chr1:58335673-58335209 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 88 |
| Conread position: | 12-489 |
| Cow position: | chr1:30023354-30023851 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 114 |
| Conread position: | 12-489 |
| Cow position: | chr1:87449790-87449293 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 111 |
| Conread position: | 12-492 |
| Cow position: | chr1:52172634-52173142 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 117 |
| Conread position: | 12-492 |
| Cow position: | chr1:57656395-57655895 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 77 |
| Conread position: | 12-492 |
| Cow position: | chr1:58224132-58223645 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 13-425 |
| Cow position: | chr1:37420138-37420542 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 15-171 |
| Cow position: | chr1:56144496-56144652 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 144, 114 |
| Conread position: | 15-477 |
| Cow position: | chr1:76752816-76753265 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 99 |
| Conread position: | 16-486 |
| Cow position: | chr1:62805973-62806432 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 100 |
| Conread position: | 16-489 |
| Cow position: | chr1:13450024-13449531 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 107 |
| Conread position: | 17-361 |
| Cow position: | chr1:31366245-31366595 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 19-457 |
| Cow position: | chr1:23050477-23050048 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 26-492 |
| Cow position: | chr1:11863439-11863909 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 108 |
| Conread position: | 30-487 |
| Cow position: | chr1:97560536-97560060 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 87, 96 |
| Conread position: | 32-486 |
| Cow position: | chr1:3934348-3934771 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 37-317 |
| Cow position: | chr1:30283791-30284061 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 70 |
| Conread position: | 39-488 |
| Cow position: | chr1:52233290-52233702 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 47-476 |
| Cow position: | chr1:61732854-61732449 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 116, 8 |
| Conread position: | 64-472 |
| Cow position: | chr1:72135222-72134825 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 42 |
| Conread position: | 64-486 |
| Cow position: | chr1:72080263-72079852 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 66 |
| Conread position: | 70-465 |
| Cow position: | chr1:94659656-94659273 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 77-317 |
| Cow position: | chr1:56722904-56722663 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 79-477 |
| Cow position: | chr1:101760947-101760560 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 84, 11 |
| Conread position: | 97-492 |
| Cow position: | chr1:37455465-37455084 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 126-492 |
| Cow position: | chr1:9382520-9382908 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 310 |
| Conread position: | 129-477 |
| Cow position: | chr1:53046220-53046557 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 133-468 |
| Cow position: | chr1:40907845-40907516 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 163-486 |
| Cow position: | chr1:91893316-91893625 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 293, 44 |
| Conread position: | 172-423 |
| Cow position: | chr1:102548842-102548603 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 207-486 |
| Cow position: | chr1:99910200-99909932 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 215-487 |
| Cow position: | chr1:78289697-78289424 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 251, 18 |
| Conread position: | 228-489 |
| Cow position: | chr1:69764633-69764371 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 232-453 |
| Cow position: | chr1:42290045-42289837 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 232-468 |
| Cow position: | chr1:62854183-62854417 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 235-424 |
| Cow position: | chr1:87208007-87208191 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 241-492 |
| Cow position: | chr1:53364318-53364073 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 258-488 |
| Cow position: | chr1:45097207-45096979 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 265-476 |
| Cow position: | chr1:52323494-52323286 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 280-473 |
| Cow position: | chr1:76703767-76703959 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 295-487 |
| Cow position: | chr1:68501556-68501365 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 304-486 |
| Cow position: | chr1:38414396-38414214 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 168, 108 |
| Conread position: | 304-486 |
| Cow position: | chr1:89361519-89361338 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 304-489 |
| Cow position: | chr1:28722378-28722195 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 304-492 |
| Cow position: | chr1:33895035-33894849 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.