Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-274
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               162, 89
               

               Conread position:
               1-423
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 89
               

               Conread position:
               1-424
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 99
               

               Conread position:
               1-429
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 125
               

               Conread position:
               1-444
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 127
               

               Conread position:
               1-456
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 94
               

               Conread position:
               1-457
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 123
               

               Conread position:
               1-466
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 77
               

               Conread position:
               1-468
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 89
               

               Conread position:
               1-468
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 90
               

               Conread position:
               1-468
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 96
               

               Conread position:
               1-474
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 94
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               333
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               12, 123
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 122
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 132
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 129
               

               Conread position:
               2-133
               

               Cow position:
               
               

               Alignm length:
               133
               

               Alignm identity:
               100
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               98, 10
               

               Conread position:
               2-256
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               160, 10
               

               Conread position:
               2-273
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               110, 21
               

               Conread position:
               2-464
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 138
               

               Conread position:
               2-468
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 93
               

               Conread position:
               2-474
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               317
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               2-477
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 113
               

               Conread position:
               3-481
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 69
               

               Conread position:
               4-217
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               9, 122
               

               Conread position:
               5-427
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               285
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               87, 7
               

               Conread position:
               7-201
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               155, 24
               

               Conread position:
               7-486
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 122
               

               Conread position:
               7-491
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               421, 87
               

               Conread position:
               8-237
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               220, 121
               

               Conread position:
               8-429
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 135
               

               Conread position:
               8-465
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 48
               

               Conread position:
               8-466
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-469
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 121
               

               Conread position:
               8-469
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-474
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 82
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 69
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 87
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 87
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-487
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-487
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               326
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               157, 31
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               321
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               157, 66
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 86
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 87
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               338
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               101, 218
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 57
               

               Conread position:
               9-254
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               103, 118
               

               Conread position:
               9-429
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 105
               

               Conread position:
               12-273
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               79, 117
               

               Conread position:
               12-457
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 77
               

               Conread position:
               12-466
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 113
               

               Conread position:
               12-477
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-489
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 81
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 112
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 94
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 112
               

               Conread position:
               15-284
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 114
               

               Conread position:
               15-488
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 109
               

               Conread position:
               16-489
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 110
               

               Conread position:
               25-482
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               139, 95
               

               Conread position:
               33-390
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               82, 20
               

               Conread position:
               33-488
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 94
               

               Conread position:
               59-480
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               60-460
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 35
               

               Conread position:
               68-487
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               69-260
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               95, 61
               

               Conread position:
               100-489
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               65, 25
               

               Conread position:
               118-477
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               130-322
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               28, 99
               

               Conread position:
               221-475
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               163, 9
               

               Conread position:
               233-492
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               125, 17
               

               Conread position:
               240-466
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               251-492
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               54, 60
               

               Conread position:
               300-487
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               31, 114
               

               Conread position:
               304-486
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               152, 111
               

               Conread position:
               312-466
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               103, 0
               
Show alignments to all cow chromosomes.