Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-274 |
| Cow position: | chr10:38847245-38846978 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 162, 89 |
| Conread position: | 1-423 |
| Cow position: | chr10:276465-276077 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 89 |
| Conread position: | 1-424 |
| Cow position: | chr10:62216478-62216077 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 99 |
| Conread position: | 1-429 |
| Cow position: | chr10:21076236-21075831 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 125 |
| Conread position: | 1-444 |
| Cow position: | chr10:62778215-62777797 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 127 |
| Conread position: | 1-456 |
| Cow position: | chr10:24298980-24299421 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 94 |
| Conread position: | 1-457 |
| Cow position: | chr10:47906653-47906177 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-466 |
| Cow position: | chr10:38538622-38539071 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 77 |
| Conread position: | 1-468 |
| Cow position: | chr10:25498227-25497781 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 1-468 |
| Cow position: | chr10:29696113-29695664 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 90 |
| Conread position: | 1-468 |
| Cow position: | chr10:60489538-60489076 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 1-474 |
| Cow position: | chr10:49310406-49309958 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 94 |
| Conread position: | 1-487 |
| Cow position: | chr10:21740876-21741384 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-492 |
| Cow position: | chr10:280748-281259 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 122 |
| Conread position: | 1-492 |
| Cow position: | chr10:41566983-41566470 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 1-492 |
| Cow position: | chr10:61297202-61296690 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 129 |
| Conread position: | 2-133 |
| Cow position: | chr10:50018187-50018318 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 2-256 |
| Cow position: | chr10:15862428-15862674 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 2-273 |
| Cow position: | chr10:24978260-24978535 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 110, 21 |
| Conread position: | 2-464 |
| Cow position: | chr10:41351882-41352335 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 2-468 |
| Cow position: | chr10:34685766-34685326 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 93 |
| Conread position: | 2-474 |
| Cow position: | chr10:14885981-14886426 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 317 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-477 |
| Cow position: | chr10:37060802-37060337 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 3-481 |
| Cow position: | chr10:46191244-46190789 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 69 |
| Conread position: | 4-217 |
| Cow position: | chr10:29632988-29633190 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 5-427 |
| Cow position: | chr10:32064019-32063613 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 7-201 |
| Cow position: | chr10:42628532-42628347 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 155, 24 |
| Conread position: | 7-486 |
| Cow position: | chr10:37769688-37769222 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 7-491 |
| Cow position: | chr10:31523705-31523258 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 87 |
| Conread position: | 8-237 |
| Cow position: | chr10:25359264-25359039 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 220, 121 |
| Conread position: | 8-429 |
| Cow position: | chr10:8289848-8289425 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 135 |
| Conread position: | 8-465 |
| Cow position: | chr10:19511470-19511032 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 48 |
| Conread position: | 8-466 |
| Cow position: | chr10:1375401-1374959 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-469 |
| Cow position: | chr10:10581538-10581072 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 121 |
| Conread position: | 8-469 |
| Cow position: | chr10:22101106-22100659 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-474 |
| Cow position: | chr10:4499573-4499120 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 82 |
| Conread position: | 8-486 |
| Cow position: | chr10:124174-123714 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 8-486 |
| Cow position: | chr10:7282818-7283281 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr10:19143474-19143944 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 87 |
| Conread position: | 8-486 |
| Cow position: | chr10:21486781-21486314 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 121 |
| Conread position: | 8-486 |
| Cow position: | chr10:29846745-29847222 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr10:32650597-32650137 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 87 |
| Conread position: | 8-486 |
| Cow position: | chr10:57990099-57990557 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-487 |
| Cow position: | chr10:51952737-51953237 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-487 |
| Cow position: | chr10:57559687-57560182 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 157, 31 |
| Conread position: | 8-489 |
| Cow position: | chr10:19840017-19839538 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 157, 66 |
| Conread position: | 8-489 |
| Cow position: | chr10:21400807-21401302 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 86 |
| Conread position: | 8-489 |
| Cow position: | chr10:32578168-32577664 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr10:39179648-39179156 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 87 |
| Conread position: | 8-489 |
| Cow position: | chr10:39817485-39817979 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 99 |
| Conread position: | 8-492 |
| Cow position: | chr10:25565381-25565898 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 338 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 101, 218 |
| Conread position: | 8-492 |
| Cow position: | chr10:41157315-41156816 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 57 |
| Conread position: | 9-254 |
| Cow position: | chr10:58596368-58596130 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 103, 118 |
| Conread position: | 9-429 |
| Cow position: | chr10:62408988-62409395 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 105 |
| Conread position: | 12-273 |
| Cow position: | chr10:39881409-39881673 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 12-457 |
| Cow position: | chr10:34318401-34318822 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 77 |
| Conread position: | 12-466 |
| Cow position: | chr10:39041444-39041887 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 113 |
| Conread position: | 12-477 |
| Cow position: | chr10:38345502-38345964 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-489 |
| Cow position: | chr10:11685803-11686290 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 81 |
| Conread position: | 12-492 |
| Cow position: | chr10:4192351-4192853 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 12-492 |
| Cow position: | chr10:14803695-14803204 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 94 |
| Conread position: | 12-492 |
| Cow position: | chr10:55092971-55092475 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 112 |
| Conread position: | 15-284 |
| Cow position: | chr10:19715188-19715456 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 114 |
| Conread position: | 15-488 |
| Cow position: | chr10:41876776-41876287 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 16-489 |
| Cow position: | chr10:21467112-21466618 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 110 |
| Conread position: | 25-482 |
| Cow position: | chr10:42747949-42747511 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 139, 95 |
| Conread position: | 33-390 |
| Cow position: | chr10:28116601-28116943 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 33-488 |
| Cow position: | chr10:38546383-38546832 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 94 |
| Conread position: | 59-480 |
| Cow position: | chr10:54127273-54126868 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 60-460 |
| Cow position: | chr10:14951526-14951153 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 68-487 |
| Cow position: | chr10:28641275-28640854 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 69-260 |
| Cow position: | chr10:2123307-2123499 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 100-489 |
| Cow position: | chr10:19497140-19497550 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 118-477 |
| Cow position: | chr10:37040842-37040499 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 130-322 |
| Cow position: | chr10:42736251-42736065 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 221-475 |
| Cow position: | chr10:41144663-41144903 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 233-492 |
| Cow position: | chr10:42628120-42627856 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 240-466 |
| Cow position: | chr10:2123765-2123977 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 251-492 |
| Cow position: | chr10:29633197-29633434 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 300-487 |
| Cow position: | chr10:39780265-39780453 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 304-486 |
| Cow position: | chr10:25358936-25358749 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 111 |
| Conread position: | 312-466 |
| Cow position: | chr10:23458433-23458586 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.