Cow genome map

Conread name: Ss1.1-rpigcf0_021389.5

Conread position: 1-210
Cow position: chr11:21466586-21466384 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 162, 106

Conread position: 1-213
Cow position: chr11:44861015-44861229 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 139, 0

Conread position: 1-224
Cow position: chr11:31414727-31414947 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 64, 48

Conread position: 1-290
Cow position: chr11:30125737-30126008 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 161, 34

Conread position: 1-423
Cow position: chr11:9659885-9660273 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 11

Conread position: 1-468
Cow position: chr11:8887640-8888086 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 129

Conread position: 1-472
Cow position: chr11:17925058-17925506 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 302
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 114, 81

Conread position: 1-477
Cow position: chr11:42428849-42428388 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 102

Conread position: 1-487
Cow position: chr11:28063200-28062707 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 126

Conread position: 1-487
Cow position: chr11:52462606-52462106 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 129

Conread position: 1-489
Cow position: chr11:36744667-36745176 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 100

Conread position: 1-489
Cow position: chr11:37477605-37478114 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 124

Conread position: 1-489
Cow position: chr11:52418902-52418399 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 100

Conread position: 1-491
Cow position: chr11:4041550-4042064 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 110

Conread position: 2-242
Cow position: chr11:66726008-66725779 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 160, 10

Conread position: 2-259
Cow position: chr11:44157725-44157981 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 157, 10

Conread position: 2-444
Cow position: chr11:37492140-37492545 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 18

Conread position: 2-486
Cow position: chr11:26125420-26125897 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-486
Cow position: chr11:58133880-58133390 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 10

Conread position: 3-201
Cow position: chr11:17220705-17220895 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 159, 6

Conread position: 4-489
Cow position: chr11:25527088-25526636 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 333
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 5, 9

Conread position: 6-485
Cow position: chr11:54209132-54208659 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 123

Conread position: 7-456
Cow position: chr11:9157918-9158346 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 5

Conread position: 7-465
Cow position: chr11:44507672-44507238 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 152, 5

Conread position: 7-486
Cow position: chr11:41171189-41171640 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 122

Conread position: 7-489
Cow position: chr11:76374966-76375433 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 5

Conread position: 8-150
Cow position: chr11:12351560-12351701 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 8-220
Cow position: chr11:7072970-7073172 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 82, 0

Conread position: 8-266
Cow position: chr11:63660079-63660341 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 116, 105

Conread position: 8-301
Cow position: chr11:1496566-1496851 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 154, 59

Conread position: 8-317
Cow position: chr11:31925703-31925403 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 112

Conread position: 8-317
Cow position: chr11:32450370-32450062 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-429
Cow position: chr11:11987623-11987213 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 122

Conread position: 8-455
Cow position: chr11:15998401-15997976 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 302
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 182, 87

Conread position: 8-456
Cow position: chr11:7687424-7686964 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 311
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 84, 211

Conread position: 8-457
Cow position: chr11:12093264-12092822 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 122

Conread position: 8-463
Cow position: chr11:38835914-38836357 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-466
Cow position: chr11:10846947-10846510 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 83

Conread position: 8-466
Cow position: chr11:19102983-19103429 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-466
Cow position: chr11:43515128-43515597 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 88

Conread position: 8-466
Cow position: chr11:71329147-71328703 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 123

Conread position: 8-473
Cow position: chr11:9220508-9220967 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 27

Conread position: 8-477
Cow position: chr11:28055091-28055537 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-477
Cow position: chr11:72110458-72110913 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 85

Conread position: 8-486
Cow position: chr11:12358919-12359384 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 121

Conread position: 8-486
Cow position: chr11:23876807-23876335 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr11:24392828-24392362 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 17

Conread position: 8-486
Cow position: chr11:29669126-29669594 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr11:37093559-37094025 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr11:85394306-85394774 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 121

Conread position: 8-487
Cow position: chr11:77729023-77729489 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 122

Conread position: 8-489
Cow position: chr11:9736449-9736944 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 333
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 157, 102

Conread position: 8-489
Cow position: chr11:19064747-19065254 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chr11:20921243-20921744 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 118

Conread position: 8-489
Cow position: chr11:57628544-57629038 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-492
Cow position: chr11:8262193-8262668 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 87

Conread position: 8-492
Cow position: chr11:28230246-28230744 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 99

Conread position: 8-492
Cow position: chr11:67450000-67449491 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 105

Conread position: 8-492
Cow position: chr11:67847065-67847567 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 41

Conread position: 9-468
Cow position: chr11:10210461-10210909 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 94

Conread position: 9-492
Cow position: chr11:45110635-45110137 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 75

Conread position: 10-492
Cow position: chr11:24677558-24677097 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 13

Conread position: 12-252
Cow position: chr11:40777232-40777474 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 38, 118

Conread position: 12-468
Cow position: chr11:24242944-24242508 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 216, 13

Conread position: 12-468
Cow position: chr11:34020407-34019974 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 12-474
Cow position: chr11:4028051-4028498 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 117

Conread position: 12-476
Cow position: chr11:32683185-32682722 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 301
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 150, 75

Conread position: 12-488
Cow position: chr11:17108187-17108663 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 118

Conread position: 12-489
Cow position: chr11:3492511-3492016 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 81

Conread position: 13-225
Cow position: chr11:29234147-29234354 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 150, 77

Conread position: 13-474
Cow position: chr11:65162038-65162479 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 15

Conread position: 15-492
Cow position: chr11:53287959-53288438 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 101

Conread position: 17-225
Cow position: chr11:33195118-33195325 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 148, 106

Conread position: 23-486
Cow position: chr11:53432281-53432731 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 106

Conread position: 24-474
Cow position: chr11:81853104-81853541 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 35

Conread position: 26-418
Cow position: chr11:7394600-7394221 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 80

Conread position: 26-489
Cow position: chr11:44496101-44496550 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 98

Conread position: 36-486
Cow position: chr11:8244197-8243737 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 324
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 98, 189

Conread position: 36-491
Cow position: chr11:15983105-15982645 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 318
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 129, 59

Conread position: 58-484
Cow position: chr11:27283440-27283014 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 277
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 99, 66

Conread position: 59-489
Cow position: chr11:52530481-52530039 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 67

Conread position: 67-485
Cow position: chr11:7112895-7112489 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 19

Conread position: 71-489
Cow position: chr11:39798833-39799272 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 296
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 36, 55

Conread position: 77-317
Cow position: chr11:9607236-9607468 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 106-486
Cow position: chr11:4271423-4271801 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 56, 24

Conread position: 151-456
Cow position: chr11:75919928-75919624 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 0

Conread position: 188-460
Cow position: chr11:56179241-56178984 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 40

Conread position: 200-489
Cow position: chr11:7073300-7073568 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 28, 13

Conread position: 204-464
Cow position: chr11:12351969-12352229 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 25

Conread position: 224-468
Cow position: chr11:75132827-75132584 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 188, 0

Conread position: 241-423
Cow position: chr11:30304563-30304381 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 172

Conread position: 256-492
Cow position: chr11:30126025-30126260 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 118, 159

Conread position: 262-470
Cow position: chr11:21466367-21466161 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 132, 0

Conread position: 268-470
Cow position: chr11:7306275-7306483 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 9

Conread position: 276-492
Cow position: chr11:63661331-63661541 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 295-488
Cow position: chr11:40779420-40779611 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 89, 29

Conread position: 295-492
Cow position: chr11:31925375-31925181 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 49

Conread position: 304-477
Cow position: chr11:44158241-44158414 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 152, 111

Conread position: 304-489
Cow position: chr11:33195705-33195886 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 304-492
Cow position: chr11:7122119-7122306 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 0

Show alignments to all cow chromosomes.