Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-210 |
| Cow position: | chr12:48404846-48404638 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 111, 121 |
| Conread position: | 1-217 |
| Cow position: | chr12:8310982-8310766 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 86, 127 |
| Conread position: | 1-217 |
| Cow position: | chr12:21901743-21901535 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 162, 88 |
| Conread position: | 1-224 |
| Cow position: | chr12:2595-2373 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 162, 126 |
| Conread position: | 1-453 |
| Cow position: | chr12:22026554-22026134 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 158, 110 |
| Conread position: | 1-473 |
| Cow position: | chr12:1868266-1867808 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 1-487 |
| Cow position: | chr12:21426494-21425995 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 336 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 1-492 |
| Cow position: | chr12:2282343-2281856 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 1-492 |
| Cow position: | chr12:32653345-32652825 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 2-172 |
| Cow position: | chr12:42420616-42420784 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 161, 8 |
| Conread position: | 2-423 |
| Cow position: | chr12:26947460-26947858 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 8 |
| Conread position: | 2-455 |
| Cow position: | chr12:8678324-8678762 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-474 |
| Cow position: | chr12:2839796-2840249 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 14 |
| Conread position: | 2-474 |
| Cow position: | chr12:21499915-21499457 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 7, 89 |
| Conread position: | 2-492 |
| Cow position: | chr12:25101264-25101758 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 10 |
| Conread position: | 7-210 |
| Cow position: | chr12:14662820-14663022 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 155, 93 |
| Conread position: | 7-489 |
| Cow position: | chr12:37558350-37557850 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 116 |
| Conread position: | 8-317 |
| Cow position: | chr12:21254866-21255169 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 179, 117 |
| Conread position: | 8-423 |
| Cow position: | chr12:22332411-22332011 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 285 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 166, 17 |
| Conread position: | 8-459 |
| Cow position: | chr12:10483835-10483382 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 79 |
| Conread position: | 8-466 |
| Cow position: | chr12:252267-252713 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 123 |
| Conread position: | 8-479 |
| Cow position: | chr12:11098031-11097572 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr12:6406857-6407321 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 111 |
| Conread position: | 8-486 |
| Cow position: | chr12:20998330-20998803 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 123 |
| Conread position: | 8-486 |
| Cow position: | chr12:22205955-22206413 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr12:42860025-42860490 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-489 |
| Cow position: | chr12:26141603-26141101 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-489 |
| Cow position: | chr12:43031593-43032083 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 12-487 |
| Cow position: | chr12:21197617-21197149 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 6 |
| Conread position: | 12-492 |
| Cow position: | chr12:21207483-21206986 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 111 |
| Conread position: | 13-329 |
| Cow position: | chr12:15951471-15951777 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 90 |
| Conread position: | 15-477 |
| Cow position: | chr12:1402276-1401827 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 114 |
| Conread position: | 15-486 |
| Cow position: | chr12:27933163-27933623 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 114 |
| Conread position: | 18-226 |
| Cow position: | chr12:21941559-21941352 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 109 |
| Conread position: | 38-478 |
| Cow position: | chr12:3360673-3360211 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 127, 87 |
| Conread position: | 47-489 |
| Cow position: | chr12:21883777-21883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 160-394 |
| Cow position: | chr12:9708821-9709060 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 170-486 |
| Cow position: | chr12:28766469-28766776 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 177-492 |
| Cow position: | chr12:22121347-22121041 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 183-489 |
| Cow position: | chr12:7425245-7424939 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 196-466 |
| Cow position: | chr12:14663119-14663391 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 200-475 |
| Cow position: | chr12:21058370-21058639 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 209-489 |
| Cow position: | chr12:48404363-48404094 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 189, 19 |
| Conread position: | 239-473 |
| Cow position: | chr12:32183108-32182882 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 244-468 |
| Cow position: | chr12:45261217-45260995 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 245-423 |
| Cow position: | chr12:2379-2202 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 256-461 |
| Cow position: | chr12:21941058-21940861 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 304-457 |
| Cow position: | chr12:8310554-8310402 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 306-468 |
| Cow position: | chr12:21901483-21901322 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 317-474 |
| Cow position: | chr12:15954194-15954348 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.