Cow genome map
Conread name: | Ss1.1-rpigcf0_021389.5 |
Conread position: | 1-204 |
Cow position: | chr13:3058417-3058620 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 155 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 164, 122 |
Conread position: | 1-397 |
Cow position: | chr13:30140569-30140178 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 243 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 285, 115 |
Conread position: | 1-423 |
Cow position: | chr13:33825152-33825562 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 189, 95 |
Conread position: | 1-429 |
Cow position: | chr13:3654735-3655147 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 86 |
Conread position: | 1-468 |
Cow position: | chr13:34692738-34692306 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 0 |
Conread position: | 1-470 |
Cow position: | chr13:62328006-62328451 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 90 |
Conread position: | 1-488 |
Cow position: | chr13:30657385-30657846 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 113 |
Conread position: | 1-489 |
Cow position: | chr13:4872656-4872145 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 126 |
Conread position: | 1-489 |
Cow position: | chr13:50109043-50108558 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 126 |
Conread position: | 1-492 |
Cow position: | chr13:32986470-32986985 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 95 |
Conread position: | 1-492 |
Cow position: | chr13:34187112-34187586 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 134 |
Conread position: | 2-217 |
Cow position: | chr13:33927984-33928185 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 159 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 160, 88 |
Conread position: | 2-250 |
Cow position: | chr13:34936713-34936463 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 195 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 74, 95 |
Conread position: | 2-466 |
Cow position: | chr13:32738244-32738684 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 14 |
Conread position: | 2-468 |
Cow position: | chr13:3276732-3276287 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 87 |
Conread position: | 2-470 |
Cow position: | chr13:48356901-48356449 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 108 |
Conread position: | 2-471 |
Cow position: | chr13:34143082-34143516 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 130 |
Conread position: | 2-492 |
Cow position: | chr13:34326100-34326594 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 125 |
Conread position: | 4-486 |
Cow position: | chr13:32544521-32544055 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 88 |
Conread position: | 7-317 |
Cow position: | chr13:34868339-34868030 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 88 |
Conread position: | 8-367 |
Cow position: | chr13:4482045-4481704 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-405 |
Cow position: | chr13:54284157-54283774 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 11 |
Conread position: | 8-456 |
Cow position: | chr13:46732782-46733194 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 292 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 155, 99 |
Conread position: | 8-464 |
Cow position: | chr13:4940655-4940211 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 121 |
Conread position: | 8-464 |
Cow position: | chr13:35756809-35756361 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 130 |
Conread position: | 8-466 |
Cow position: | chr13:9044079-9043655 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 114 |
Conread position: | 8-466 |
Cow position: | chr13:31612767-31613212 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 99 |
Conread position: | 8-468 |
Cow position: | chr13:2908875-2909310 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 105 |
Conread position: | 8-476 |
Cow position: | chr13:13046250-13046684 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 120 |
Conread position: | 8-486 |
Cow position: | chr13:1593586-1594057 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-486 |
Cow position: | chr13:15520945-15521420 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-486 |
Cow position: | chr13:30302637-30302171 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 35 |
Conread position: | 8-486 |
Cow position: | chr13:33336754-33337217 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 121 |
Conread position: | 8-486 |
Cow position: | chr13:34042796-34043263 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 121 |
Conread position: | 8-489 |
Cow position: | chr13:30245165-30245659 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 115 |
Conread position: | 8-492 |
Cow position: | chr13:2297230-2297726 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 56 |
Conread position: | 8-492 |
Cow position: | chr13:15543034-15542560 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-492 |
Cow position: | chr13:15924814-15925290 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-492 |
Cow position: | chr13:20542792-20543256 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 67 |
Conread position: | 8-492 |
Cow position: | chr13:31734512-31735007 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 98 |
Conread position: | 12-423 |
Cow position: | chr13:31832173-31831786 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 12-468 |
Cow position: | chr13:6668559-6669020 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 117 |
Conread position: | 12-489 |
Cow position: | chr13:2389228-2389729 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 197 |
Conread position: | 12-489 |
Cow position: | chr13:21840630-21841129 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 112 |
Conread position: | 15-489 |
Cow position: | chr13:17308042-17307557 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 325 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 150, 91 |
Conread position: | 15-489 |
Cow position: | chr13:35030077-35029596 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 80 |
Conread position: | 15-489 |
Cow position: | chr13:53834334-53833839 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 111 |
Conread position: | 22-226 |
Cow position: | chr13:34911811-34912012 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 157 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 140, 68 |
Conread position: | 25-253 |
Cow position: | chr13:30237722-30237501 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 169 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 133, 84 |
Conread position: | 49-492 |
Cow position: | chr13:61951719-61951291 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 296 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 168, 80 |
Conread position: | 65-489 |
Cow position: | chr13:676477-676034 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 291 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 100, 65 |
Conread position: | 78-489 |
Cow position: | chr13:49973216-49972782 (view UCSC Genome Browser custom track) |
Alignm length: | 437 |
Alignm identity: | 281 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 87, 52 |
Conread position: | 104-457 |
Cow position: | chr13:47859797-47859470 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 249 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 60, 11 |
Conread position: | 131-489 |
Cow position: | chr13:51764075-51763695 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 256 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 34, 83 |
Conread position: | 142-476 |
Cow position: | chr13:15080733-15081056 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 220 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 22, 71 |
Conread position: | 230-468 |
Cow position: | chr13:2232040-2231815 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 166 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 251-487 |
Cow position: | chr13:34936195-34935960 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 174 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 70, 33 |
Conread position: | 286-461 |
Cow position: | chr13:44184747-44184920 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 134 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 10, 91 |
Conread position: | 304-487 |
Cow position: | chr13:3058984-3059166 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 125 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.