Cow genome map

Conread name: Ss1.1-rpigcf0_021389.5

Conread position: 1-204
Cow position: chr13:3058417-3058620 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 164, 122

Conread position: 1-397
Cow position: chr13:30140569-30140178 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 243
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 285, 115

Conread position: 1-423
Cow position: chr13:33825152-33825562 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 95

Conread position: 1-429
Cow position: chr13:3654735-3655147 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 86

Conread position: 1-468
Cow position: chr13:34692738-34692306 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 1-470
Cow position: chr13:62328006-62328451 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 90

Conread position: 1-488
Cow position: chr13:30657385-30657846 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 113

Conread position: 1-489
Cow position: chr13:4872656-4872145 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 126

Conread position: 1-489
Cow position: chr13:50109043-50108558 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 126

Conread position: 1-492
Cow position: chr13:32986470-32986985 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 95

Conread position: 1-492
Cow position: chr13:34187112-34187586 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 134

Conread position: 2-217
Cow position: chr13:33927984-33928185 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 160, 88

Conread position: 2-250
Cow position: chr13:34936713-34936463 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 74, 95

Conread position: 2-466
Cow position: chr13:32738244-32738684 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 14

Conread position: 2-468
Cow position: chr13:3276732-3276287 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 87

Conread position: 2-470
Cow position: chr13:48356901-48356449 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 108

Conread position: 2-471
Cow position: chr13:34143082-34143516 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 130

Conread position: 2-492
Cow position: chr13:34326100-34326594 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 4-486
Cow position: chr13:32544521-32544055 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 88

Conread position: 7-317
Cow position: chr13:34868339-34868030 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 88

Conread position: 8-367
Cow position: chr13:4482045-4481704 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-405
Cow position: chr13:54284157-54283774 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 11

Conread position: 8-456
Cow position: chr13:46732782-46733194 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 292
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 155, 99

Conread position: 8-464
Cow position: chr13:4940655-4940211 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 121

Conread position: 8-464
Cow position: chr13:35756809-35756361 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 130

Conread position: 8-466
Cow position: chr13:9044079-9043655 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 114

Conread position: 8-466
Cow position: chr13:31612767-31613212 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 99

Conread position: 8-468
Cow position: chr13:2908875-2909310 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 105

Conread position: 8-476
Cow position: chr13:13046250-13046684 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 120

Conread position: 8-486
Cow position: chr13:1593586-1594057 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr13:15520945-15521420 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr13:30302637-30302171 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 35

Conread position: 8-486
Cow position: chr13:33336754-33337217 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 121

Conread position: 8-486
Cow position: chr13:34042796-34043263 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 121

Conread position: 8-489
Cow position: chr13:30245165-30245659 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-492
Cow position: chr13:2297230-2297726 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 56

Conread position: 8-492
Cow position: chr13:15543034-15542560 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-492
Cow position: chr13:15924814-15925290 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-492
Cow position: chr13:20542792-20543256 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 67

Conread position: 8-492
Cow position: chr13:31734512-31735007 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 98

Conread position: 12-423
Cow position: chr13:31832173-31831786 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 12-468
Cow position: chr13:6668559-6669020 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 117

Conread position: 12-489
Cow position: chr13:2389228-2389729 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 197

Conread position: 12-489
Cow position: chr13:21840630-21841129 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 112

Conread position: 15-489
Cow position: chr13:17308042-17307557 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 325
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 150, 91

Conread position: 15-489
Cow position: chr13:35030077-35029596 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 80

Conread position: 15-489
Cow position: chr13:53834334-53833839 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 111

Conread position: 22-226
Cow position: chr13:34911811-34912012 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 140, 68

Conread position: 25-253
Cow position: chr13:30237722-30237501 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 133, 84

Conread position: 49-492
Cow position: chr13:61951719-61951291 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 296
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 168, 80

Conread position: 65-489
Cow position: chr13:676477-676034 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 291
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 100, 65

Conread position: 78-489
Cow position: chr13:49973216-49972782 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 281
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 87, 52

Conread position: 104-457
Cow position: chr13:47859797-47859470 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 249
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 60, 11

Conread position: 131-489
Cow position: chr13:51764075-51763695 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 256
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 83

Conread position: 142-476
Cow position: chr13:15080733-15081056 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 71

Conread position: 230-468
Cow position: chr13:2232040-2231815 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 251-487
Cow position: chr13:34936195-34935960 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 70, 33

Conread position: 286-461
Cow position: chr13:44184747-44184920 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 10, 91

Conread position: 304-487
Cow position: chr13:3058984-3059166 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 108, 0

Show alignments to all cow chromosomes.