Cow genome map

Conread name: Ss1.1-rpigcf0_021389.5

Conread position: 1-162
Cow position: chr14:44422009-44421850 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 12

Conread position: 1-199
Cow position: chr14:7831088-7831280 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 11, 0

Conread position: 1-210
Cow position: chr14:44855973-44856182 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 156, 126

Conread position: 1-224
Cow position: chr14:34775047-34774832 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 161, 89

Conread position: 1-224
Cow position: chr14:47624021-47623801 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 157, 99

Conread position: 1-255
Cow position: chr14:43552872-43552621 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 6, 12

Conread position: 1-275
Cow position: chr14:14309612-14309880 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 114, 126

Conread position: 1-371
Cow position: chr14:22018856-22018478 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 11

Conread position: 1-372
Cow position: chr14:36967711-36967363 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 260
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 99, 127

Conread position: 1-453
Cow position: chr14:23690772-23691205 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 128

Conread position: 1-460
Cow position: chr14:35387678-35388128 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 137

Conread position: 1-466
Cow position: chr14:45833617-45833162 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 136

Conread position: 1-468
Cow position: chr14:41085356-41085783 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 40

Conread position: 1-474
Cow position: chr14:44780463-44780921 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 6, 70

Conread position: 1-474
Cow position: chr14:44782803-44783261 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 6, 70

Conread position: 1-475
Cow position: chr14:11468051-11467600 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 113

Conread position: 1-477
Cow position: chr14:22032230-22032690 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 128

Conread position: 1-489
Cow position: chr14:13660535-13660992 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 331
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 98, 131

Conread position: 1-490
Cow position: chr14:45916852-45916348 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 79

Conread position: 1-492
Cow position: chr14:13272710-13272226 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 42

Conread position: 1-492
Cow position: chr14:40339163-40338668 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 129

Conread position: 1-492
Cow position: chr14:44376888-44376400 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 96

Conread position: 2-252
Cow position: chr14:44261639-44261890 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 113

Conread position: 2-285
Cow position: chr14:40170221-40170509 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 73

Conread position: 2-486
Cow position: chr14:50110030-50109566 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 8

Conread position: 2-492
Cow position: chr14:44225864-44225376 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 21

Conread position: 3-476
Cow position: chr14:44580395-44579941 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 120

Conread position: 4-226
Cow position: chr14:29048448-29048666 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 9, 92

Conread position: 4-317
Cow position: chr14:45205523-45205199 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 215
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 97

Conread position: 6-486
Cow position: chr14:5528513-5528041 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 10

Conread position: 7-454
Cow position: chr14:19328821-19329255 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 5

Conread position: 7-480
Cow position: chr14:45160311-45159828 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 123

Conread position: 7-492
Cow position: chr14:17684841-17684373 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 46

Conread position: 7-492
Cow position: chr14:30596923-30597434 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 337
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 157, 23

Conread position: 8-198
Cow position: chr14:13778309-13778119 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 151, 121

Conread position: 8-198
Cow position: chr14:16920237-16920427 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 151, 121

Conread position: 8-225
Cow position: chr14:9045010-9044794 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 157, 121

Conread position: 8-260
Cow position: chr14:45079979-45079733 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 118, 79

Conread position: 8-275
Cow position: chr14:46669767-46669505 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 150, 45

Conread position: 8-317
Cow position: chr14:750014-749712 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 157, 99

Conread position: 8-441
Cow position: chr14:14422565-14422978 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 85, 23

Conread position: 8-452
Cow position: chr14:37223347-37222915 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 121

Conread position: 8-454
Cow position: chr14:20781901-20781470 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 88

Conread position: 8-464
Cow position: chr14:7471821-7471377 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-479
Cow position: chr14:44551500-44551034 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 120

Conread position: 8-485
Cow position: chr14:46464236-46463777 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 98

Conread position: 8-486
Cow position: chr14:11154708-11155178 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr14:13302476-13302005 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr14:17001610-17002076 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr14:28994410-28994884 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr14:44685493-44685012 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 122

Conread position: 8-488
Cow position: chr14:46084070-46083605 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 68

Conread position: 8-489
Cow position: chr14:17492012-17492508 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 96

Conread position: 8-489
Cow position: chr14:30585491-30585993 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chr14:45672600-45673100 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 108

Conread position: 8-489
Cow position: chr14:45712530-45712978 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 331
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 69, 116

Conread position: 8-492
Cow position: chr14:45767451-45767004 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 323
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 79, 109

Conread position: 9-376
Cow position: chr14:38532854-38533218 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 47

Conread position: 9-460
Cow position: chr14:31607474-31607901 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 306
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 206

Conread position: 9-484
Cow position: chr14:15277407-15277851 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 322
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 180, 87

Conread position: 10-413
Cow position: chr14:33235445-33235046 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 252
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 105, 6

Conread position: 12-217
Cow position: chr14:45850669-45850465 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 151, 101

Conread position: 12-463
Cow position: chr14:48254871-48255310 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 13

Conread position: 12-486
Cow position: chr14:16273855-16274324 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 118

Conread position: 12-489
Cow position: chr14:44130368-44129930 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 328
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 118, 85

Conread position: 14-224
Cow position: chr14:1500193-1499983 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 114

Conread position: 14-492
Cow position: chr14:50134349-50133888 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 15-253
Cow position: chr14:23256799-23256556 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 94, 195

Conread position: 17-489
Cow position: chr14:2283424-2282939 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 106

Conread position: 35-489
Cow position: chr14:17241653-17241184 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 311
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 130, 70

Conread position: 37-466
Cow position: chr14:41755289-41754871 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 28

Conread position: 78-487
Cow position: chr14:33394428-33394858 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 284
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 87, 52

Conread position: 79-487
Cow position: chr14:10562006-10561577 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 86, 54

Conread position: 103-472
Cow position: chr14:41407210-41406831 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 262
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 60, 17

Conread position: 129-489
Cow position: chr14:9044782-9044426 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 223
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 98, 71

Conread position: 165-464
Cow position: chr14:5511479-5511190 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 51

Conread position: 172-423
Cow position: chr14:42404187-42403938 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 49

Conread position: 200-485
Cow position: chr14:45304374-45304652 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 207-489
Cow position: chr14:16418311-16418595 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 176

Conread position: 237-469
Cow position: chr14:16920519-16920738 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 241-453
Cow position: chr14:44856187-44856398 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 77, 12

Conread position: 245-489
Cow position: chr14:47623807-47623576 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 304-489
Cow position: chr14:29049249-29049433 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 331-488
Cow position: chr14:46434329-46434173 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 46

Show alignments to all cow chromosomes.