Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-162
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               6, 12
               

               Conread position:
               1-199
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               1-210
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               156, 126
               

               Conread position:
               1-224
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               161, 89
               

               Conread position:
               1-224
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               1-255
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               6, 12
               

               Conread position:
               1-275
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               114, 126
               

               Conread position:
               1-371
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 11
               

               Conread position:
               1-372
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               99, 127
               

               Conread position:
               1-453
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 128
               

               Conread position:
               1-460
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 137
               

               Conread position:
               1-466
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 136
               

               Conread position:
               1-468
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 40
               

               Conread position:
               1-474
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               6, 70
               

               Conread position:
               1-474
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               6, 70
               

               Conread position:
               1-475
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 113
               

               Conread position:
               1-477
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 128
               

               Conread position:
               1-489
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               331
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               1-490
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 79
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 42
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 129
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 96
               

               Conread position:
               2-252
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               5, 113
               

               Conread position:
               2-285
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 73
               

               Conread position:
               2-486
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 8
               

               Conread position:
               2-492
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 21
               

               Conread position:
               3-476
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 120
               

               Conread position:
               4-226
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               4-317
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 97
               

               Conread position:
               6-486
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 10
               

               Conread position:
               7-454
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 5
               

               Conread position:
               7-480
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 123
               

               Conread position:
               7-492
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 46
               

               Conread position:
               7-492
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               337
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               157, 23
               

               Conread position:
               8-198
               

               Cow position:
               
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-198
               

               Cow position:
               
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-225
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               157, 121
               

               Conread position:
               8-260
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               118, 79
               

               Conread position:
               8-275
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               150, 45
               

               Conread position:
               8-317
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               8-441
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               85, 23
               

               Conread position:
               8-452
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 121
               

               Conread position:
               8-454
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 88
               

               Conread position:
               8-464
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-479
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 120
               

               Conread position:
               8-485
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 98
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 122
               

               Conread position:
               8-488
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 68
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 96
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 108
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               331
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               69, 116
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               323
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               79, 109
               

               Conread position:
               9-376
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 47
               

               Conread position:
               9-460
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 206
               

               Conread position:
               9-484
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               322
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               180, 87
               

               Conread position:
               10-413
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               105, 6
               

               Conread position:
               12-217
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               151, 101
               

               Conread position:
               12-463
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 13
               

               Conread position:
               12-486
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 118
               

               Conread position:
               12-489
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               328
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               118, 85
               

               Conread position:
               14-224
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               26, 114
               

               Conread position:
               14-492
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 34
               

               Conread position:
               15-253
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               94, 195
               

               Conread position:
               17-489
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 106
               

               Conread position:
               35-489
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               37-466
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 28
               

               Conread position:
               78-487
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               284
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               87, 52
               

               Conread position:
               79-487
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               86, 54
               

               Conread position:
               103-472
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               60, 17
               

               Conread position:
               129-489
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               223
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               98, 71
               

               Conread position:
               165-464
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               6, 51
               

               Conread position:
               172-423
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               66, 49
               

               Conread position:
               200-485
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               207-489
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               20, 176
               

               Conread position:
               237-469
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               241-453
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               77, 12
               

               Conread position:
               245-489
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               304-489
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               331-488
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 46
               
Show alignments to all cow chromosomes.