Cow genome map

Conread name: Ss1.1-rpigcf0_021389.5

Conread position: 1-201
Cow position: chr16:23982418-23982218 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 158, 128

Conread position: 1-207
Cow position: chr16:6549415-6549620 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 162, 64

Conread position: 1-226
Cow position: chr16:14422821-14422599 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 162, 124

Conread position: 1-239
Cow position: chr16:9457633-9457401 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 1-241
Cow position: chr16:42740315-42740547 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 162, 83

Conread position: 1-259
Cow position: chr16:2239623-2239878 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 12, 65

Conread position: 1-265
Cow position: chr16:15369540-15369284 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 161, 42

Conread position: 1-328
Cow position: chr16:9929664-9929340 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 15, 174

Conread position: 1-432
Cow position: chr16:54647433-54647033 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 294
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 89, 0

Conread position: 1-454
Cow position: chr16:2484029-2484471 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 129

Conread position: 1-454
Cow position: chr16:16687976-16687536 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 122

Conread position: 1-457
Cow position: chr16:29982373-29981935 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 12

Conread position: 1-460
Cow position: chr16:5888589-5888122 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 303
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 55

Conread position: 1-468
Cow position: chr16:20255204-20255646 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 79

Conread position: 1-470
Cow position: chr16:29676199-29676646 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 99

Conread position: 1-474
Cow position: chr16:1568347-1568796 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 15

Conread position: 1-479
Cow position: chr16:11052278-11051838 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 11

Conread position: 1-479
Cow position: chr16:49236008-49236476 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 96

Conread position: 1-479
Cow position: chr16:55111740-55112208 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 67

Conread position: 1-481
Cow position: chr16:29032023-29031558 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 127

Conread position: 1-487
Cow position: chr16:18688022-18688493 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 34

Conread position: 1-492
Cow position: chr16:10376163-10376663 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 109

Conread position: 2-226
Cow position: chr16:10437362-10437140 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-237
Cow position: chr16:26662855-26662625 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 157, 10

Conread position: 2-284
Cow position: chr16:15491815-15491544 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 16, 129

Conread position: 2-314
Cow position: chr16:25157111-25157419 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 125

Conread position: 2-398
Cow position: chr16:40887158-40887542 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 37, 25

Conread position: 2-468
Cow position: chr16:19713742-19714183 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 125

Conread position: 2-468
Cow position: chr16:36282504-36282075 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 315
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 120, 145

Conread position: 2-468
Cow position: chr16:44965163-44964708 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 38

Conread position: 2-472
Cow position: chr16:36232498-36232956 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 109

Conread position: 2-477
Cow position: chr16:15183911-15183450 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-486
Cow position: chr16:7676589-7677064 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-488
Cow position: chr16:4303363-4303865 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 304
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 125

Conread position: 3-453
Cow position: chr16:7905747-7905330 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 29

Conread position: 4-284
Cow position: chr16:23253400-23253676 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 217, 72

Conread position: 4-470
Cow position: chr16:32935245-32934789 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 103

Conread position: 6-244
Cow position: chr16:47562793-47562564 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 7-486
Cow position: chr16:25341071-25340589 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 5

Conread position: 7-492
Cow position: chr16:25084723-25084248 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 117

Conread position: 8-113
Cow position: chr16:2411870-2411975 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-284
Cow position: chr16:24881588-24881864 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 21

Conread position: 8-346
Cow position: chr16:31592807-31593142 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 87

Conread position: 8-363
Cow position: chr16:5918584-5918230 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 92

Conread position: 8-440
Cow position: chr16:15565850-15565433 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 122

Conread position: 8-466
Cow position: chr16:407932-408376 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 121

Conread position: 8-474
Cow position: chr16:2728213-2728669 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-476
Cow position: chr16:28471996-28472452 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr16:8817005-8817475 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr16:9777231-9776765 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chr16:10204314-10204785 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 25

Conread position: 8-486
Cow position: chr16:29046120-29045660 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 111

Conread position: 8-486
Cow position: chr16:40297076-40297543 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 41

Conread position: 8-486
Cow position: chr16:49257468-49257964 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 8-487
Cow position: chr16:21185381-21184881 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 118

Conread position: 8-488
Cow position: chr16:31848-31362 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 327
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 157, 56

Conread position: 8-489
Cow position: chr16:6942722-6942220 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chr16:32605927-32605423 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 118

Conread position: 8-492
Cow position: chr16:1430327-1429841 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 122

Conread position: 8-492
Cow position: chr16:5660960-5660469 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 110

Conread position: 9-366
Cow position: chr16:43898170-43898515 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 120

Conread position: 9-489
Cow position: chr16:28171260-28171762 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 115

Conread position: 11-419
Cow position: chr16:42051258-42051646 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 47

Conread position: 12-199
Cow position: chr16:27734709-27734896 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 147, 117

Conread position: 12-466
Cow position: chr16:25440714-25440270 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 16

Conread position: 12-476
Cow position: chr16:25458375-25458831 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 16

Conread position: 12-492
Cow position: chr16:12538829-12539299 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 117

Conread position: 15-477
Cow position: chr16:51685536-51685095 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 302
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 150, 57

Conread position: 39-282
Cow position: chr16:31376165-31376399 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 123, 68

Conread position: 39-466
Cow position: chr16:14666719-14667132 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 90

Conread position: 42-470
Cow position: chr16:39818692-39818285 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 137

Conread position: 44-200
Cow position: chr16:5483260-5483414 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 115, 75

Conread position: 85-456
Cow position: chr16:51083596-51083234 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 46

Conread position: 87-432
Cow position: chr16:12302410-12302769 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 245
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 76, 32

Conread position: 129-492
Cow position: chr16:2412037-2412390 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 33, 54

Conread position: 140-420
Cow position: chr16:37446384-37446648 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 23, 68

Conread position: 186-474
Cow position: chr16:334913-334635 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 39, 26

Conread position: 195-486
Cow position: chr16:26661589-26661306 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 18

Conread position: 210-460
Cow position: chr16:44673907-44673659 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 17

Conread position: 253-492
Cow position: chr16:15369145-15368913 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 256-486
Cow position: chr16:7483346-7483115 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 49, 149

Conread position: 295-492
Cow position: chr16:2240225-2240421 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 117, 0

Conread position: 295-492
Cow position: chr16:34527568-34527372 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 117, 0

Conread position: 304-476
Cow position: chr16:44388714-44388887 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 312-477
Cow position: chr16:25152642-25152479 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 72

Conread position: 336-486
Cow position: chr16:31593351-31593502 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 128, 80

Show alignments to all cow chromosomes.