Cow genome map
Conread name: | Ss1.1-rpigcf0_021389.5 |
Conread position: | 1-201 |
Cow position: | chr16:23982418-23982218 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 159 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 158, 128 |
Conread position: | 1-207 |
Cow position: | chr16:6549415-6549620 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 158 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 162, 64 |
Conread position: | 1-226 |
Cow position: | chr16:14422821-14422599 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 156 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 162, 124 |
Conread position: | 1-239 |
Cow position: | chr16:9457633-9457401 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 160 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 1-241 |
Cow position: | chr16:42740315-42740547 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 184 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 162, 83 |
Conread position: | 1-259 |
Cow position: | chr16:2239623-2239878 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 179 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 12, 65 |
Conread position: | 1-265 |
Cow position: | chr16:15369540-15369284 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 192 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 161, 42 |
Conread position: | 1-328 |
Cow position: | chr16:9929664-9929340 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 234 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 15, 174 |
Conread position: | 1-432 |
Cow position: | chr16:54647433-54647033 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 294 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 89, 0 |
Conread position: | 1-454 |
Cow position: | chr16:2484029-2484471 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 129 |
Conread position: | 1-454 |
Cow position: | chr16:16687976-16687536 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 122 |
Conread position: | 1-457 |
Cow position: | chr16:29982373-29981935 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 12 |
Conread position: | 1-460 |
Cow position: | chr16:5888589-5888122 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 303 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 103, 55 |
Conread position: | 1-468 |
Cow position: | chr16:20255204-20255646 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 79 |
Conread position: | 1-470 |
Cow position: | chr16:29676199-29676646 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 99 |
Conread position: | 1-474 |
Cow position: | chr16:1568347-1568796 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 230, 15 |
Conread position: | 1-479 |
Cow position: | chr16:11052278-11051838 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 11 |
Conread position: | 1-479 |
Cow position: | chr16:49236008-49236476 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 96 |
Conread position: | 1-479 |
Cow position: | chr16:55111740-55112208 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 67 |
Conread position: | 1-481 |
Cow position: | chr16:29032023-29031558 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 127 |
Conread position: | 1-487 |
Cow position: | chr16:18688022-18688493 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 230, 34 |
Conread position: | 1-492 |
Cow position: | chr16:10376163-10376663 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 109 |
Conread position: | 2-226 |
Cow position: | chr16:10437362-10437140 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 10 |
Conread position: | 2-237 |
Cow position: | chr16:26662855-26662625 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 174 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 157, 10 |
Conread position: | 2-284 |
Cow position: | chr16:15491815-15491544 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 205 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 16, 129 |
Conread position: | 2-314 |
Cow position: | chr16:25157111-25157419 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 125 |
Conread position: | 2-398 |
Cow position: | chr16:40887158-40887542 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 261 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 37, 25 |
Conread position: | 2-468 |
Cow position: | chr16:19713742-19714183 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 125 |
Conread position: | 2-468 |
Cow position: | chr16:36282504-36282075 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 315 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 120, 145 |
Conread position: | 2-468 |
Cow position: | chr16:44965163-44964708 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 38 |
Conread position: | 2-472 |
Cow position: | chr16:36232498-36232956 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 109 |
Conread position: | 2-477 |
Cow position: | chr16:15183911-15183450 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 10 |
Conread position: | 2-486 |
Cow position: | chr16:7676589-7677064 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 10 |
Conread position: | 2-488 |
Cow position: | chr16:4303363-4303865 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 304 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 16, 125 |
Conread position: | 3-453 |
Cow position: | chr16:7905747-7905330 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 29 |
Conread position: | 4-284 |
Cow position: | chr16:23253400-23253676 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 206 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 217, 72 |
Conread position: | 4-470 |
Cow position: | chr16:32935245-32934789 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 103 |
Conread position: | 6-244 |
Cow position: | chr16:47562793-47562564 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 163 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 76, 0 |
Conread position: | 7-486 |
Cow position: | chr16:25341071-25340589 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 5 |
Conread position: | 7-492 |
Cow position: | chr16:25084723-25084248 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 117 |
Conread position: | 8-113 |
Cow position: | chr16:2411870-2411975 (view UCSC Genome Browser custom track) |
Alignm length: | 106 |
Alignm identity: | 88 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 8-284 |
Cow position: | chr16:24881588-24881864 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 21 |
Conread position: | 8-346 |
Cow position: | chr16:31592807-31593142 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 87 |
Conread position: | 8-363 |
Cow position: | chr16:5918584-5918230 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 92 |
Conread position: | 8-440 |
Cow position: | chr16:15565850-15565433 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 122 |
Conread position: | 8-466 |
Cow position: | chr16:407932-408376 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 121 |
Conread position: | 8-474 |
Cow position: | chr16:2728213-2728669 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-476 |
Cow position: | chr16:28471996-28472452 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-486 |
Cow position: | chr16:8817005-8817475 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-486 |
Cow position: | chr16:9777231-9776765 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 121 |
Conread position: | 8-486 |
Cow position: | chr16:10204314-10204785 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 25 |
Conread position: | 8-486 |
Cow position: | chr16:29046120-29045660 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 111 |
Conread position: | 8-486 |
Cow position: | chr16:40297076-40297543 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 41 |
Conread position: | 8-486 |
Cow position: | chr16:49257468-49257964 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 41 |
Conread position: | 8-487 |
Cow position: | chr16:21185381-21184881 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 118 |
Conread position: | 8-488 |
Cow position: | chr16:31848-31362 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 327 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 157, 56 |
Conread position: | 8-489 |
Cow position: | chr16:6942722-6942220 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 115 |
Conread position: | 8-489 |
Cow position: | chr16:32605927-32605423 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 118 |
Conread position: | 8-492 |
Cow position: | chr16:1430327-1429841 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 122 |
Conread position: | 8-492 |
Cow position: | chr16:5660960-5660469 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 110 |
Conread position: | 9-366 |
Cow position: | chr16:43898170-43898515 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 120 |
Conread position: | 9-489 |
Cow position: | chr16:28171260-28171762 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 115 |
Conread position: | 11-419 |
Cow position: | chr16:42051258-42051646 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 47 |
Conread position: | 12-199 |
Cow position: | chr16:27734709-27734896 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 146 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 147, 117 |
Conread position: | 12-466 |
Cow position: | chr16:25440714-25440270 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 16 |
Conread position: | 12-476 |
Cow position: | chr16:25458375-25458831 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 16 |
Conread position: | 12-492 |
Cow position: | chr16:12538829-12539299 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 117 |
Conread position: | 15-477 |
Cow position: | chr16:51685536-51685095 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 302 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 150, 57 |
Conread position: | 39-282 |
Cow position: | chr16:31376165-31376399 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 177 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 123, 68 |
Conread position: | 39-466 |
Cow position: | chr16:14666719-14667132 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 90 |
Conread position: | 42-470 |
Cow position: | chr16:39818692-39818285 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 137 |
Conread position: | 44-200 |
Cow position: | chr16:5483260-5483414 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 120 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 115, 75 |
Conread position: | 85-456 |
Cow position: | chr16:51083596-51083234 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 46 |
Conread position: | 87-432 |
Cow position: | chr16:12302410-12302769 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 245 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 76, 32 |
Conread position: | 129-492 |
Cow position: | chr16:2412037-2412390 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 254 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 33, 54 |
Conread position: | 140-420 |
Cow position: | chr16:37446384-37446648 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 208 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 23, 68 |
Conread position: | 186-474 |
Cow position: | chr16:334913-334635 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 203 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 39, 26 |
Conread position: | 195-486 |
Cow position: | chr16:26661589-26661306 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 209 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 36, 18 |
Conread position: | 210-460 |
Cow position: | chr16:44673907-44673659 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 173 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 26, 17 |
Conread position: | 253-492 |
Cow position: | chr16:15369145-15368913 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 172 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 256-486 |
Cow position: | chr16:7483346-7483115 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 157 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 49, 149 |
Conread position: | 295-492 |
Cow position: | chr16:2240225-2240421 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 140 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 117, 0 |
Conread position: | 295-492 |
Cow position: | chr16:34527568-34527372 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 149 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 117, 0 |
Conread position: | 304-476 |
Cow position: | chr16:44388714-44388887 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 120 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 312-477 |
Cow position: | chr16:25152642-25152479 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 124 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 62, 72 |
Conread position: | 336-486 |
Cow position: | chr16:31593351-31593502 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 113 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 128, 80 |
Show alignments to all cow chromosomes.