Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-201
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               159
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               158, 128
               

               Conread position:
               1-207
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               162, 64
               

               Conread position:
               1-226
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               162, 124
               

               Conread position:
               1-239
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-241
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               162, 83
               

               Conread position:
               1-259
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               12, 65
               

               Conread position:
               1-265
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               161, 42
               

               Conread position:
               1-328
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               234
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               15, 174
               

               Conread position:
               1-432
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               294
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1-454
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 129
               

               Conread position:
               1-454
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 122
               

               Conread position:
               1-457
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 12
               

               Conread position:
               1-460
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               103, 55
               

               Conread position:
               1-468
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 79
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 99
               

               Conread position:
               1-474
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 15
               

               Conread position:
               1-479
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 11
               

               Conread position:
               1-479
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 96
               

               Conread position:
               1-479
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               1-481
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 127
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 34
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               2-226
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-237
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-284
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               205
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               16, 129
               

               Conread position:
               2-314
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 125
               

               Conread position:
               2-398
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               261
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               37, 25
               

               Conread position:
               2-468
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 125
               

               Conread position:
               2-468
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               315
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               120, 145
               

               Conread position:
               2-468
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 38
               

               Conread position:
               2-472
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 109
               

               Conread position:
               2-477
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-486
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-488
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               16, 125
               

               Conread position:
               3-453
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 29
               

               Conread position:
               4-284
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               217, 72
               

               Conread position:
               4-470
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 103
               

               Conread position:
               6-244
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               7-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 5
               

               Conread position:
               7-492
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 117
               

               Conread position:
               8-113
               

               Cow position:
               
               

               Alignm length:
               106
               

               Alignm identity:
               88
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-284
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 21
               

               Conread position:
               8-346
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 87
               

               Conread position:
               8-363
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 92
               

               Conread position:
               8-440
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 122
               

               Conread position:
               8-466
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 121
               

               Conread position:
               8-474
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-476
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 111
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 41
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 41
               

               Conread position:
               8-487
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-488
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               327
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               157, 56
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 122
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 110
               

               Conread position:
               9-366
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 120
               

               Conread position:
               9-489
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 115
               

               Conread position:
               11-419
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 47
               

               Conread position:
               12-199
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-466
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 16
               

               Conread position:
               12-476
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 16
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               15-477
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               302
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               150, 57
               

               Conread position:
               39-282
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               123, 68
               

               Conread position:
               39-466
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 90
               

               Conread position:
               42-470
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 137
               

               Conread position:
               44-200
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               115, 75
               

               Conread position:
               85-456
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 46
               

               Conread position:
               87-432
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               76, 32
               

               Conread position:
               129-492
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               254
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               140-420
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               208
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               23, 68
               

               Conread position:
               186-474
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               39, 26
               

               Conread position:
               195-486
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               210-460
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               26, 17
               

               Conread position:
               253-492
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               256-486
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               49, 149
               

               Conread position:
               295-492
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               295-492
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               304-476
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               312-477
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               336-486
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               128, 80
               
Show alignments to all cow chromosomes.