Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-207 |
| Cow position: | chr17:35591898-35591702 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 161, 88 |
| Conread position: | 1-210 |
| Cow position: | chr17:28109769-28109570 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 162, 44 |
| Conread position: | 1-217 |
| Cow position: | chr17:16889808-16889599 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-226 |
| Cow position: | chr17:14325811-14326038 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 158, 22 |
| Conread position: | 1-355 |
| Cow position: | chr17:20401365-20401013 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 106, 89 |
| Conread position: | 1-468 |
| Cow position: | chr17:152783-153226 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 311 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 12, 58 |
| Conread position: | 1-468 |
| Cow position: | chr17:32024513-32024945 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 445, 15 |
| Conread position: | 1-470 |
| Cow position: | chr17:22429799-22430228 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 383, 82 |
| Conread position: | 1-470 |
| Cow position: | chr17:27345488-27345047 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-489 |
| Cow position: | chr17:1383127-1383637 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 2-182 |
| Cow position: | chr17:20088071-20088253 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-242 |
| Cow position: | chr17:23857350-23857606 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 223 |
| Conread position: | 2-468 |
| Cow position: | chr17:1284075-1284522 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 125 |
| Conread position: | 2-470 |
| Cow position: | chr17:4081335-4080871 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 269 |
| Conread position: | 2-472 |
| Cow position: | chr17:2588018-2587548 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 91, 284 |
| Conread position: | 2-486 |
| Cow position: | chr17:11088040-11088526 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 4-487 |
| Cow position: | chr17:9653768-9654273 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 6-486 |
| Cow position: | chr17:6259379-6258916 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 39 |
| Conread position: | 7-407 |
| Cow position: | chr17:2287054-2286677 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 120 |
| Conread position: | 7-465 |
| Cow position: | chr17:3643159-3643591 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 122 |
| Conread position: | 7-466 |
| Cow position: | chr17:15322507-15322067 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 5 |
| Conread position: | 7-486 |
| Cow position: | chr17:13857096-13857578 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 112 |
| Conread position: | 7-489 |
| Cow position: | chr17:43988215-43987697 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 83, 408 |
| Conread position: | 8-157 |
| Cow position: | chr17:2738054-2737907 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 8-225 |
| Cow position: | chr17:15435467-15435255 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 157, 78 |
| Conread position: | 8-266 |
| Cow position: | chr17:25737339-25737080 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 8-283 |
| Cow position: | chr17:14893837-14893565 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 8-317 |
| Cow position: | chr17:24633633-24633323 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-433 |
| Cow position: | chr17:2248905-2249324 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-454 |
| Cow position: | chr17:18104004-18104438 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-461 |
| Cow position: | chr17:4059784-4059342 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 123 |
| Conread position: | 8-467 |
| Cow position: | chr17:228625-229092 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 157, 86 |
| Conread position: | 8-477 |
| Cow position: | chr17:13929344-13928896 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 102 |
| Conread position: | 8-477 |
| Cow position: | chr17:19269686-19270128 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 124 |
| Conread position: | 8-486 |
| Cow position: | chr17:2579235-2578770 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 14 |
| Conread position: | 8-486 |
| Cow position: | chr17:16859880-16860367 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 108, 212 |
| Conread position: | 8-487 |
| Cow position: | chr17:2261786-2261298 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 101 |
| Conread position: | 8-489 |
| Cow position: | chr17:6089485-6089945 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 243, 111 |
| Conread position: | 8-489 |
| Cow position: | chr17:11783047-11782546 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr17:14217348-14217851 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr17:20666050-20666546 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 122 |
| Conread position: | 8-489 |
| Cow position: | chr17:22160592-22160090 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-492 |
| Cow position: | chr17:15157283-15157775 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 102 |
| Conread position: | 8-492 |
| Cow position: | chr17:15370753-15370299 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 45 |
| Conread position: | 8-492 |
| Cow position: | chr17:24780724-24780225 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 12-226 |
| Cow position: | chr17:39933358-39933147 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 12-423 |
| Cow position: | chr17:55010-55387 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 12-443 |
| Cow position: | chr17:40804071-40803646 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 70 |
| Conread position: | 12-470 |
| Cow position: | chr17:44853256-44853671 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 12-484 |
| Cow position: | chr17:31200393-31200858 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 116 |
| Conread position: | 12-489 |
| Cow position: | chr17:8208782-8208284 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 88 |
| Conread position: | 15-317 |
| Cow position: | chr17:249591-249295 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 148, 44 |
| Conread position: | 15-492 |
| Cow position: | chr17:15143694-15144188 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 338 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 16-381 |
| Cow position: | chr17:22131610-22131274 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 112, 90 |
| Conread position: | 16-474 |
| Cow position: | chr17:2146878-2146444 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 25-474 |
| Cow position: | chr17:12670679-12671102 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 138, 83 |
| Conread position: | 32-492 |
| Cow position: | chr17:6119803-6119322 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 91 |
| Conread position: | 64-476 |
| Cow position: | chr17:1945798-1945407 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 80-313 |
| Cow position: | chr17:31768666-31768901 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 97-489 |
| Cow position: | chr17:181204-180808 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 146-486 |
| Cow position: | chr17:1879085-1878747 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 150-466 |
| Cow position: | chr17:42264090-42263793 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 199-477 |
| Cow position: | chr17:3694182-3694466 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 230-468 |
| Cow position: | chr17:455390-455627 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 241-470 |
| Cow position: | chr17:15417299-15417076 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 244-453 |
| Cow position: | chr17:35591696-35591493 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 277-489 |
| Cow position: | chr17:20024437-20024229 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 295-492 |
| Cow position: | chr17:1775136-1775327 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 181, 73 |
| Conread position: | 300-492 |
| Cow position: | chr17:249076-248897 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 300-492 |
| Cow position: | chr17:16889557-16889368 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 304-492 |
| Cow position: | chr17:20088482-20088664 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 308-486 |
| Cow position: | chr17:25736847-25736670 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 164, 12 |
Show alignments to all cow chromosomes.