Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-210 |
| Cow position: | chr18:17992671-17992879 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 162, 28 |
| Conread position: | 1-210 |
| Cow position: | chr18:33268732-33268526 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 114, 126 |
| Conread position: | 1-210 |
| Cow position: | chr18:51310475-51310269 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 1-217 |
| Cow position: | chr18:1521020-1520804 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 99 |
| Conread position: | 1-217 |
| Cow position: | chr18:2019791-2020005 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 1-227 |
| Cow position: | chr18:47719674-47719903 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 1-423 |
| Cow position: | chr18:23944480-23944869 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 112 |
| Conread position: | 1-423 |
| Cow position: | chr18:39748473-39748080 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 1-429 |
| Cow position: | chr18:48221768-48221375 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 76 |
| Conread position: | 1-444 |
| Cow position: | chr18:35335380-35334957 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 116 |
| Conread position: | 1-468 |
| Cow position: | chr18:33358758-33358311 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 1-470 |
| Cow position: | chr18:51257874-51257443 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 1-486 |
| Cow position: | chr18:36508224-36507745 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 128 |
| Conread position: | 1-486 |
| Cow position: | chr18:43147033-43147495 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 127 |
| Conread position: | 1-492 |
| Cow position: | chr18:25349930-25349454 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 128 |
| Conread position: | 2-199 |
| Cow position: | chr18:27986920-27986722 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 128 |
| Conread position: | 2-464 |
| Cow position: | chr18:28974011-28974457 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 10 |
| Conread position: | 2-466 |
| Cow position: | chr18:54024467-54024928 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 2-486 |
| Cow position: | chr18:37504954-37504484 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-492 |
| Cow position: | chr18:54002384-54001879 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 153, 21 |
| Conread position: | 4-193 |
| Cow position: | chr18:51464582-51464770 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 6-210 |
| Cow position: | chr18:32293660-32293459 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 156, 7 |
| Conread position: | 6-492 |
| Cow position: | chr18:16078590-16078087 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 125 |
| Conread position: | 7-226 |
| Cow position: | chr18:14415863-14415646 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 152, 5 |
| Conread position: | 7-413 |
| Cow position: | chr18:51480725-51480330 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 7-460 |
| Cow position: | chr18:33335755-33335310 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 5 |
| Conread position: | 7-487 |
| Cow position: | chr18:16660119-16660592 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 123 |
| Conread position: | 8-206 |
| Cow position: | chr18:32651881-32651682 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 8-223 |
| Cow position: | chr18:22602371-22602157 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-260 |
| Cow position: | chr18:54171959-54172212 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 8-316 |
| Cow position: | chr18:47741902-47741593 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-429 |
| Cow position: | chr18:14130178-14129770 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr18:16176722-16177200 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr18:23797535-23797069 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr18:41840941-41841411 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-488 |
| Cow position: | chr18:35288134-35287667 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 8-488 |
| Cow position: | chr18:55089041-55089541 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 121 |
| Conread position: | 8-489 |
| Cow position: | chr18:33953684-33954188 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 60 |
| Conread position: | 8-489 |
| Cow position: | chr18:37585779-37586281 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-489 |
| Cow position: | chr18:44621643-44621140 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 98 |
| Conread position: | 8-489 |
| Cow position: | chr18:51660301-51659809 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 8-492 |
| Cow position: | chr18:11275216-11275700 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 86 |
| Conread position: | 8-492 |
| Cow position: | chr18:19352270-19351756 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 206 |
| Conread position: | 9-211 |
| Cow position: | chr18:40478266-40478066 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 132, 110 |
| Conread position: | 15-460 |
| Cow position: | chr18:45958571-45958145 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 92 |
| Conread position: | 16-486 |
| Cow position: | chr18:27838427-27838884 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 18-269 |
| Cow position: | chr18:9186889-9187139 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 36-372 |
| Cow position: | chr18:42244699-42245014 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 64-489 |
| Cow position: | chr18:29236607-29236183 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 66 |
| Conread position: | 78-489 |
| Cow position: | chr18:23746158-23746589 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 138-460 |
| Cow position: | chr18:43200549-43200237 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 179-457 |
| Cow position: | chr18:17993021-17993295 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 205, 157 |
| Conread position: | 188-466 |
| Cow position: | chr18:27986624-27986357 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 188-486 |
| Cow position: | chr18:40477849-40477562 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 200-492 |
| Cow position: | chr18:32651643-32651361 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 230-468 |
| Cow position: | chr18:30198345-30198109 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 241-453 |
| Cow position: | chr18:32293454-32293242 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 128, 172 |
| Conread position: | 249-492 |
| Cow position: | chr18:54172421-54172657 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 164 |
| Conread position: | 256-453 |
| Cow position: | chr18:2020244-2020439 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 108 |
| Conread position: | 304-492 |
| Cow position: | chr18:33268483-33268296 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.