Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-217 |
| Cow position: | chr19:30372177-30371956 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 1-423 |
| Cow position: | chr19:29209456-29209059 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 41 |
| Conread position: | 1-453 |
| Cow position: | chr19:4532848-4533299 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 72 |
| Conread position: | 1-470 |
| Cow position: | chr19:416548-416104 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 186, 87 |
| Conread position: | 1-471 |
| Cow position: | chr19:4252463-4252911 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 12 |
| Conread position: | 1-474 |
| Cow position: | chr19:359609-360084 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 163, 29 |
| Conread position: | 1-492 |
| Cow position: | chr19:34319-33836 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 1-492 |
| Cow position: | chr19:37795-37287 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 1-492 |
| Cow position: | chr19:7341967-7341460 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 2-207 |
| Cow position: | chr19:32665427-32665222 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 161, 125 |
| Conread position: | 2-210 |
| Cow position: | chr19:39688440-39688236 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 2-260 |
| Cow position: | chr19:32183551-32183809 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 2-467 |
| Cow position: | chr19:35376451-35376009 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 2-476 |
| Cow position: | chr19:36477250-36476794 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 157, 85 |
| Conread position: | 4-478 |
| Cow position: | chr19:40887752-40888202 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 4-486 |
| Cow position: | chr19:39390413-39389950 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-489 |
| Cow position: | chr19:43143612-43143106 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 6-474 |
| Cow position: | chr19:439756-440198 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 123 |
| Conread position: | 7-241 |
| Cow position: | chr19:170851-171086 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 117, 202 |
| Conread position: | 7-318 |
| Cow position: | chr19:548280-547969 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 150, 5 |
| Conread position: | 7-361 |
| Cow position: | chr19:30755066-30754715 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 80, 119 |
| Conread position: | 7-454 |
| Cow position: | chr19:203853-203421 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 108 |
| Conread position: | 8-316 |
| Cow position: | chr19:28593165-28592869 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 8-332 |
| Cow position: | chr19:377984-378310 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 95, 216 |
| Conread position: | 8-363 |
| Cow position: | chr19:32244568-32244209 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-409 |
| Cow position: | chr19:28581766-28582137 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 8-456 |
| Cow position: | chr19:172099-171666 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-466 |
| Cow position: | chr19:10672418-10672864 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-470 |
| Cow position: | chr19:35979157-35978710 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 151, 115 |
| Conread position: | 8-473 |
| Cow position: | chr19:55078634-55078185 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-489 |
| Cow position: | chr19:6553282-6552830 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 8-489 |
| Cow position: | chr19:32193465-32192970 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 8-489 |
| Cow position: | chr19:52152373-52152857 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 86 |
| Conread position: | 8-492 |
| Cow position: | chr19:685732-685235 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 95, 214 |
| Conread position: | 8-492 |
| Cow position: | chr19:40852542-40853015 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 121 |
| Conread position: | 9-459 |
| Cow position: | chr19:76348-76793 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 9-466 |
| Cow position: | chr19:4385372-4384920 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 120 |
| Conread position: | 12-210 |
| Cow position: | chr19:7488197-7487999 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-423 |
| Cow position: | chr19:1031993-1031613 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 282, 77 |
| Conread position: | 12-457 |
| Cow position: | chr19:350682-351102 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 297 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 12-466 |
| Cow position: | chr19:33941496-33941059 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-469 |
| Cow position: | chr19:32223544-32223979 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 83 |
| Conread position: | 12-474 |
| Cow position: | chr19:42649188-42649627 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 150, 81 |
| Conread position: | 12-489 |
| Cow position: | chr19:32212183-32212674 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 12-492 |
| Cow position: | chr19:772483-771998 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 41 |
| Conread position: | 13-474 |
| Cow position: | chr19:20125507-20125092 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 316 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 16-492 |
| Cow position: | chr19:261315-260844 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 43 |
| Conread position: | 17-252 |
| Cow position: | chr19:893724-893955 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 68 |
| Conread position: | 18-466 |
| Cow position: | chr19:33873117-33872686 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 101 |
| Conread position: | 19-492 |
| Cow position: | chr19:32237987-32238417 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 49-201 |
| Cow position: | chr19:25622570-25622722 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 53-488 |
| Cow position: | chr19:801834-801425 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 65-456 |
| Cow position: | chr19:544059-544455 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 65 |
| Conread position: | 74-482 |
| Cow position: | chr19:27053012-27053407 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 104-475 |
| Cow position: | chr19:1492250-1492602 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 126-489 |
| Cow position: | chr19:495498-495116 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 131-488 |
| Cow position: | chr19:561937-562285 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 179-477 |
| Cow position: | chr19:893843-894128 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 200-486 |
| Cow position: | chr19:7487757-7487483 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 218-492 |
| Cow position: | chr19:352963-353224 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 232-488 |
| Cow position: | chr19:24748637-24748369 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 239-467 |
| Cow position: | chr19:39546337-39546115 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 137 |
| Conread position: | 300-492 |
| Cow position: | chr19:39687624-39687433 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 306-453 |
| Cow position: | chr19:32665168-32665022 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
Show alignments to all cow chromosomes.