Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-217
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               114, 24
               

               Conread position:
               1-423
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 41
               

               Conread position:
               1-453
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 72
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               186, 87
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 12
               

               Conread position:
               1-474
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               307
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               163, 29
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               334
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               17, 12
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 30
               

               Conread position:
               2-207
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               160
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               161, 125
               

               Conread position:
               2-210
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               11, 82
               

               Conread position:
               2-260
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               113, 27
               

               Conread position:
               2-467
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               320
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               85, 23
               

               Conread position:
               2-476
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               157, 85
               

               Conread position:
               4-478
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               325
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               54, 8
               

               Conread position:
               4-486
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               4-489
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 123
               

               Conread position:
               6-474
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 123
               

               Conread position:
               7-241
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               117, 202
               

               Conread position:
               7-318
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               229
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               150, 5
               

               Conread position:
               7-361
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               80, 119
               

               Conread position:
               7-454
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 108
               

               Conread position:
               8-316
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               40, 87
               

               Conread position:
               8-332
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               95, 216
               

               Conread position:
               8-363
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-409
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               21, 32
               

               Conread position:
               8-456
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-466
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-470
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               295
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               151, 115
               

               Conread position:
               8-473
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 79
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 112
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 86
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               323
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               95, 214
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 121
               

               Conread position:
               9-459
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               9-466
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 120
               

               Conread position:
               12-210
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-423
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               282, 77
               

               Conread position:
               12-457
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               297
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               12-466
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-469
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 83
               

               Conread position:
               12-474
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               301
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               150, 81
               

               Conread position:
               12-489
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 97
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 41
               

               Conread position:
               13-474
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               316
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               45, 62
               

               Conread position:
               16-492
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 43
               

               Conread position:
               17-252
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               128, 68
               

               Conread position:
               18-466
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 101
               

               Conread position:
               19-492
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               322
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               49-201
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 77
               

               Conread position:
               53-488
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               40, 74
               

               Conread position:
               65-456
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 65
               

               Conread position:
               74-482
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 36
               

               Conread position:
               104-475
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               20, 37
               

               Conread position:
               126-489
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               39, 63
               

               Conread position:
               131-488
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 82
               

               Conread position:
               179-477
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               52, 34
               

               Conread position:
               200-486
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               31, 13
               

               Conread position:
               218-492
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               232-488
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               239-467
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               82, 137
               

               Conread position:
               300-492
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               30, 118
               

               Conread position:
               306-453
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               106, 0
               
Show alignments to all cow chromosomes.