Cow genome map

Conread name: Ss1.1-rpigcf0_021389.5

Conread position: 1-183
Cow position:
Alignm length: 184
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 162, 62

Conread position: 1-206
Cow position:
Alignm length: 215
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 125, 0

Conread position: 1-207
Cow position:
Alignm length: 208
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 162, 134

Conread position: 1-210
Cow position:
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 157, 45

Conread position: 1-210
Cow position:
Alignm length: 211
Alignm identity: 165
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 161, 126

Conread position: 1-210
Cow position:
Alignm length: 211
Alignm identity: 162
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 161, 126

Conread position: 1-216
Cow position:
Alignm length: 218
Alignm identity: 155
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 163, 71

Conread position: 1-224
Cow position:
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 162, 123

Conread position: 1-252
Cow position:
Alignm length: 256
Alignm identity: 190
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 86, 11

Conread position: 1-260
Cow position:
Alignm length: 269
Alignm identity: 188
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 49, 6

Conread position: 1-281
Cow position:
Alignm length: 285
Alignm identity: 192
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 74

Conread position: 1-390
Cow position:
Alignm length: 392
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 31

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 128

Conread position: 1-418
Cow position:
Alignm length: 420
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 126

Conread position: 1-455
Cow position:
Alignm length: 456
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 57

Conread position: 1-456
Cow position:
Alignm length: 458
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 11

Conread position: 1-457
Cow position:
Alignm length: 463
Alignm identity: 311
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 108, 127

Conread position: 1-464
Cow position:
Alignm length: 470
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 19

Conread position: 1-468
Cow position:
Alignm length: 471
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 87

Conread position: 1-470
Cow position:
Alignm length: 480
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 109

Conread position: 1-473
Cow position:
Alignm length: 478
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 85

Conread position: 1-474
Cow position:
Alignm length: 477
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 105

Conread position: 1-474
Cow position:
Alignm length: 480
Alignm identity: 319
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 29, 110

Conread position: 1-474
Cow position:
Alignm length: 479
Alignm identity: 314
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 162, 105

Conread position: 1-477
Cow position:
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 75

Conread position: 1-477
Cow position:
Alignm length: 481
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 99

Conread position: 1-487
Cow position:
Alignm length: 506
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 430

Conread position: 1-487
Cow position:
Alignm length: 495
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 11

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 90

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 11

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 58

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 64

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 106

Conread position: 1-492
Cow position:
Alignm length: 515
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 122

Conread position: 1-492
Cow position:
Alignm length: 507
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 131

Conread position: 2-226
Cow position:
Alignm length: 227
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 5, 11

Conread position: 2-269
Cow position:
Alignm length: 272
Alignm identity: 193
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 113, 10

Conread position: 2-394
Cow position:
Alignm length: 394
Alignm identity: 276
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 161, 125

Conread position: 2-423
Cow position:
Alignm length: 430
Alignm identity: 295
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 155, 14

Conread position: 2-466
Cow position:
Alignm length: 476
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 10

Conread position: 2-470
Cow position:
Alignm length: 471
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 10

Conread position: 2-472
Cow position:
Alignm length: 477
Alignm identity: 313
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 156, 14

Conread position: 2-476
Cow position:
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-481
Cow position:
Alignm length: 486
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-484
Cow position:
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-486
Cow position:
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 14

Conread position: 2-486
Cow position:
Alignm length: 488
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 129

Conread position: 2-488
Cow position:
Alignm length: 491
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 10

Conread position: 2-491
Cow position:
Alignm length: 515
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 14

Conread position: 3-272
Cow position:
Alignm length: 270
Alignm identity: 182
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 3-460
Cow position:
Alignm length: 465
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 107

Conread position: 4-207
Cow position:
Alignm length: 206
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 111, 123

Conread position: 4-492
Cow position:
Alignm length: 490
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 132

Conread position: 5-469
Cow position:
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 132

Conread position: 6-477
Cow position:
Alignm length: 475
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 10

Conread position: 6-486
Cow position:
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 94

Conread position: 6-492
Cow position:
Alignm length: 491
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 29

Conread position: 7-385
Cow position:
Alignm length: 384
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 80

Conread position: 7-489
Cow position:
Alignm length: 486
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 66

Conread position: 8-198
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 109, 118

Conread position: 8-199
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 151, 121

Conread position: 8-226
Cow position:
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 155, 121

Conread position: 8-260
Cow position:
Alignm length: 256
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-290
Cow position:
Alignm length: 286
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 157, 115

Conread position: 8-317
Cow position:
Alignm length: 313
Alignm identity: 216
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 157, 79

Conread position: 8-317
Cow position:
Alignm length: 314
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 105, 86

Conread position: 8-409
Cow position:
Alignm length: 404
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 86

Conread position: 8-427
Cow position:
Alignm length: 447
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-429
Cow position:
Alignm length: 425
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-459
Cow position:
Alignm length: 455
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 122

Conread position: 8-466
Cow position:
Alignm length: 473
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 211

Conread position: 8-469
Cow position:
Alignm length: 463
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 111

Conread position: 8-473
Cow position:
Alignm length: 467
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-475
Cow position:
Alignm length: 486
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 98

Conread position: 8-477
Cow position:
Alignm length: 486
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 121

Conread position: 8-485
Cow position:
Alignm length: 479
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-486
Cow position:
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position:
Alignm length: 485
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 74

Conread position: 8-486
Cow position:
Alignm length: 486
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 27

Conread position: 8-486
Cow position:
Alignm length: 486
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 117

Conread position: 8-486
Cow position:
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position:
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 87

Conread position: 8-487
Cow position:
Alignm length: 507
Alignm identity: 328
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position:
Alignm length: 491
Alignm identity: 321
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 24, 55

Conread position: 8-489
Cow position:
Alignm length: 506
Alignm identity: 338
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 219, 10

Conread position: 8-489
Cow position:
Alignm length: 506
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 118

Conread position: 8-489
Cow position:
Alignm length: 507
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position:
Alignm length: 506
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 102

Conread position: 8-489
Cow position:
Alignm length: 507
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 118

Conread position: 8-492
Cow position:
Alignm length: 510
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 110

Conread position: 8-492
Cow position:
Alignm length: 510
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 87

Conread position: 8-492
Cow position:
Alignm length: 492
Alignm identity: 309
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 96, 107

Conread position: 9-194
Cow position:
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 10

Conread position: 9-423
Cow position:
Alignm length: 417
Alignm identity: 286
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 18, 88

Conread position: 9-475
Cow position:
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 114

Conread position: 9-489
Cow position:
Alignm length: 507
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 40

Conread position: 12-219
Cow position:
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 150, 83

Conread position: 12-239
Cow position:
Alignm length: 230
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 88, 46

Conread position: 12-455
Cow position:
Alignm length: 447
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 11

Conread position: 12-474
Cow position:
Alignm length: 466
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 78

Conread position: 12-477
Cow position:
Alignm length: 469
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 13

Conread position: 12-477
Cow position:
Alignm length: 474
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 118

Conread position: 12-486
Cow position:
Alignm length: 478
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 92

Conread position: 12-489
Cow position:
Alignm length: 506
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 97

Conread position: 12-492
Cow position:
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 70

Conread position: 13-472
Cow position:
Alignm length: 465
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 67

Conread position: 15-489
Cow position:
Alignm length: 499
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 192

Conread position: 16-489
Cow position:
Alignm length: 499
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 110

Conread position: 18-486
Cow position:
Alignm length: 477
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 111

Conread position: 37-204
Cow position:
Alignm length: 170
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 68, 78

Conread position: 64-482
Cow position:
Alignm length: 426
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 24

Conread position: 64-492
Cow position:
Alignm length: 432
Alignm identity: 292
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 99, 45

Conread position: 68-428
Cow position:
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 28

Conread position: 70-489
Cow position:
Alignm length: 422
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 35

Conread position: 126-486
Cow position:
Alignm length: 370
Alignm identity: 261
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 32, 51

Conread position: 129-474
Cow position:
Alignm length: 349
Alignm identity: 244
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 84

Conread position: 163-474
Cow position:
Alignm length: 315
Alignm identity: 224
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 19, 14

Conread position: 183-489
Cow position:
Alignm length: 308
Alignm identity: 190
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 230

Conread position: 183-492
Cow position:
Alignm length: 314
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 30

Conread position: 184-486
Cow position:
Alignm length: 308
Alignm identity: 210
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 47, 29

Conread position: 214-492
Cow position:
Alignm length: 297
Alignm identity: 214
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 12, 0

Conread position: 233-492
Cow position:
Alignm length: 261
Alignm identity: 189
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 213, 58

Conread position: 237-471
Cow position:
Alignm length: 237
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 209, 25

Conread position: 248-491
Cow position:
Alignm length: 259
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 18

Conread position: 249-457
Cow position:
Alignm length: 209
Alignm identity: 156
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 163, 0

Conread position: 250-489
Cow position:
Alignm length: 241
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 46

Conread position: 251-423
Cow position:
Alignm length: 180
Alignm identity: 132
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 66

Conread position: 262-465
Cow position:
Alignm length: 206
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 197, 0

Conread position: 273-492
Cow position:
Alignm length: 220
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 139, 0

Conread position: 295-489
Cow position:
Alignm length: 195
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 295-489
Cow position:
Alignm length: 195
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 302-474
Cow position:
Alignm length: 173
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 0

Show alignments to all cow chromosomes.