Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-217 |
| Cow position: | chr20:5484042-5483831 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-217 |
| Cow position: | chr20:24614402-24614187 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 162, 126 |
| Conread position: | 1-284 |
| Cow position: | chr20:20905335-20905611 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 57 |
| Conread position: | 1-470 |
| Cow position: | chr20:28593595-28593132 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 51 |
| Conread position: | 1-470 |
| Cow position: | chr20:30684191-30683734 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 128 |
| Conread position: | 1-476 |
| Cow position: | chr20:29572331-29572798 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 1-477 |
| Cow position: | chr20:21914178-21913726 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 128 |
| Conread position: | 1-486 |
| Cow position: | chr20:12438909-12439368 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 128 |
| Conread position: | 1-488 |
| Cow position: | chr20:3252281-3252752 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 89 |
| Conread position: | 1-492 |
| Cow position: | chr20:10102693-10103173 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 1-492 |
| Cow position: | chr20:15064621-15064121 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 2-226 |
| Cow position: | chr20:10846225-10846447 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 2-472 |
| Cow position: | chr20:8993966-8994415 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 113, 69 |
| Conread position: | 2-474 |
| Cow position: | chr20:20755580-20756030 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 2-486 |
| Cow position: | chr20:5534792-5534324 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 2-492 |
| Cow position: | chr20:21393423-21392949 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 6-472 |
| Cow position: | chr20:822598-822117 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 6-488 |
| Cow position: | chr20:11276446-11276908 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 8-115 |
| Cow position: | chr20:19192283-19192390 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-210 |
| Cow position: | chr20:28565755-28565957 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-225 |
| Cow position: | chr20:5560870-5561086 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-454 |
| Cow position: | chr20:7116625-7117059 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 121 |
| Conread position: | 8-465 |
| Cow position: | chr20:18315734-18316184 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 8-486 |
| Cow position: | chr20:23469814-23470287 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 8-486 |
| Cow position: | chr20:23798727-23798253 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 102 |
| Conread position: | 8-486 |
| Cow position: | chr20:25851145-25851611 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr20:27869042-27868574 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 121 |
| Conread position: | 8-492 |
| Cow position: | chr20:13762751-13762282 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 12-207 |
| Cow position: | chr20:3032777-3032584 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 12-473 |
| Cow position: | chr20:8004672-8005121 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-488 |
| Cow position: | chr20:8313592-8314039 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 150, 115 |
| Conread position: | 15-489 |
| Cow position: | chr20:4799807-4800238 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 329 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 175, 93 |
| Conread position: | 15-489 |
| Cow position: | chr20:31124244-31123749 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 111 |
| Conread position: | 16-209 |
| Cow position: | chr20:3270554-3270367 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 147, 7 |
| Conread position: | 16-489 |
| Cow position: | chr20:19437795-19437314 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 93 |
| Conread position: | 18-470 |
| Cow position: | chr20:28160616-28160161 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 112 |
| Conread position: | 19-284 |
| Cow position: | chr20:29948020-29947754 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 110 |
| Conread position: | 32-471 |
| Cow position: | chr20:13758088-13757655 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 246 |
| Conread position: | 41-488 |
| Cow position: | chr20:13681279-13681702 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 54 |
| Conread position: | 59-466 |
| Cow position: | chr20:15291842-15291447 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 68-466 |
| Cow position: | chr20:35119032-35118650 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 62 |
| Conread position: | 126-489 |
| Cow position: | chr20:19192907-19192522 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 193 |
| Conread position: | 188-404 |
| Cow position: | chr20:9954582-9954777 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 241-492 |
| Cow position: | chr20:10846680-10846926 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 258-476 |
| Cow position: | chr20:24614190-24613972 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 155 |
| Conread position: | 264-468 |
| Cow position: | chr20:5483816-5483618 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 303-489 |
| Cow position: | chr20:1058165-1058350 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 304-474 |
| Cow position: | chr20:15135357-15135188 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 304-492 |
| Cow position: | chr20:3032547-3032359 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 124, 108 |
| Conread position: | 304-492 |
| Cow position: | chr20:19006041-19006231 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 121, 108 |
Show alignments to all cow chromosomes.