Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-210 |
| Cow position: | chr21:4076818-4076609 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 1-224 |
| Cow position: | chr21:3615263-3615044 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 161, 44 |
| Conread position: | 1-224 |
| Cow position: | chr21:6699584-6699816 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 1-313 |
| Cow position: | chr21:11453681-11453994 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 1-379 |
| Cow position: | chr21:21517174-21516819 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 161, 89 |
| Conread position: | 1-417 |
| Cow position: | chr21:2501911-2501503 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 1-468 |
| Cow position: | chr21:2716710-2717141 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 383, 55 |
| Conread position: | 1-468 |
| Cow position: | chr21:13124024-13124454 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 309 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 221, 89 |
| Conread position: | 1-471 |
| Cow position: | chr21:2530155-2530597 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 89 |
| Conread position: | 1-474 |
| Cow position: | chr21:20744776-20745218 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 1-488 |
| Cow position: | chr21:2510627-2510121 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-489 |
| Cow position: | chr21:4222716-4223171 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 103, 113 |
| Conread position: | 1-489 |
| Cow position: | chr21:12056025-12056528 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-489 |
| Cow position: | chr21:17572896-17572392 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 1-489 |
| Cow position: | chr21:47939451-47938985 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 1-490 |
| Cow position: | chr21:35596339-35595884 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 27 |
| Conread position: | 2-275 |
| Cow position: | chr21:34054942-34055216 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 88 |
| Conread position: | 2-283 |
| Cow position: | chr21:2789021-2789293 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 2-325 |
| Cow position: | chr21:23860754-23860425 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 7, 108 |
| Conread position: | 2-398 |
| Cow position: | chr21:33755269-33754877 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 2-486 |
| Cow position: | chr21:10566647-10566170 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-486 |
| Cow position: | chr21:40271848-40272316 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 10 |
| Conread position: | 2-492 |
| Cow position: | chr21:2883764-2884249 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 127 |
| Conread position: | 3-476 |
| Cow position: | chr21:358986-358532 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 4-317 |
| Cow position: | chr21:26819045-26819359 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 4-492 |
| Cow position: | chr21:2416206-2415722 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 8 |
| Conread position: | 6-260 |
| Cow position: | chr21:30599948-30600202 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 6-487 |
| Cow position: | chr21:7267570-7268039 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 108 |
| Conread position: | 8-197 |
| Cow position: | chr21:30561766-30561577 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-211 |
| Cow position: | chr21:34292983-34292780 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 155, 119 |
| Conread position: | 8-316 |
| Cow position: | chr21:39425027-39424724 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 8-453 |
| Cow position: | chr21:3426453-3426044 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 8-453 |
| Cow position: | chr21:3778732-3778305 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 122 |
| Conread position: | 8-486 |
| Cow position: | chr21:145883-145422 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 8-486 |
| Cow position: | chr21:1191006-1190539 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr21:28529580-28530077 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 11 |
| Conread position: | 8-486 |
| Cow position: | chr21:31559691-31560152 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 87 |
| Conread position: | 8-489 |
| Cow position: | chr21:2476546-2477045 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr21:4090615-4090111 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 119 |
| Conread position: | 8-489 |
| Cow position: | chr21:11505550-11505051 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 8 |
| Conread position: | 8-489 |
| Cow position: | chr21:26638499-26638992 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 99 |
| Conread position: | 8-489 |
| Cow position: | chr21:27708726-27708224 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr21:37044877-37044387 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 75 |
| Conread position: | 8-492 |
| Cow position: | chr21:5016064-5016567 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 12-456 |
| Cow position: | chr21:1292212-1292653 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 121 |
| Conread position: | 12-486 |
| Cow position: | chr21:10850040-10849575 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-486 |
| Cow position: | chr21:21947841-21948308 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 151, 133 |
| Conread position: | 12-486 |
| Cow position: | chr21:33251352-33250890 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-486 |
| Cow position: | chr21:48116068-48115606 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-489 |
| Cow position: | chr21:46915547-46915054 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 83 |
| Conread position: | 13-216 |
| Cow position: | chr21:9891570-9891369 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 102, 114 |
| Conread position: | 15-488 |
| Cow position: | chr21:2769505-2769965 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 16-212 |
| Cow position: | chr21:2674681-2674877 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 16-423 |
| Cow position: | chr21:4183494-4183085 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 99 |
| Conread position: | 17-475 |
| Cow position: | chr21:47948064-47947594 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 18-470 |
| Cow position: | chr21:34259258-34259688 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 109 |
| Conread position: | 37-460 |
| Cow position: | chr21:4590031-4590445 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 60 |
| Conread position: | 53-317 |
| Cow position: | chr21:39580641-39580376 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 66-226 |
| Cow position: | chr21:23811816-23811660 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 70-488 |
| Cow position: | chr21:19610018-19609579 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 82-420 |
| Cow position: | chr21:41953073-41952742 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 90-487 |
| Cow position: | chr21:2454600-2454184 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 126-492 |
| Cow position: | chr21:2542025-2542385 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 129-474 |
| Cow position: | chr21:35089547-35089205 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 191-492 |
| Cow position: | chr21:30561050-30560756 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 245-488 |
| Cow position: | chr21:3615050-3614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 156, 40 |
| Conread position: | 249-468 |
| Cow position: | chr21:29086239-29086025 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 258-468 |
| Cow position: | chr21:34292533-34292328 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 272-492 |
| Cow position: | chr21:23809480-23809261 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 281-470 |
| Cow position: | chr21:18820402-18820590 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 102 |
| Conread position: | 304-473 |
| Cow position: | chr21:30601739-30601903 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 304-489 |
| Cow position: | chr21:4455773-4455590 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.