Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-190 |
| Cow position: | chr22:32485534-32485718 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 161, 123 |
| Conread position: | 1-197 |
| Cow position: | chr22:158112-158312 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-217 |
| Cow position: | chr22:1319194-1318978 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 162, 126 |
| Conread position: | 1-217 |
| Cow position: | chr22:37067112-37067325 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 127 |
| Conread position: | 1-242 |
| Cow position: | chr22:41419886-41420128 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 1-420 |
| Cow position: | chr22:45880336-45880724 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 82 |
| Conread position: | 1-423 |
| Cow position: | chr22:1293698-1294112 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 57 |
| Conread position: | 1-449 |
| Cow position: | chr22:42771346-42770929 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 113 |
| Conread position: | 1-456 |
| Cow position: | chr22:15851137-15850680 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 57 |
| Conread position: | 1-468 |
| Cow position: | chr22:36534165-36534612 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 127 |
| Conread position: | 1-468 |
| Cow position: | chr22:39882377-39882815 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 44 |
| Conread position: | 1-471 |
| Cow position: | chr22:33350968-33350518 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 319 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 92, 206 |
| Conread position: | 1-474 |
| Cow position: | chr22:1047180-1046723 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 1-474 |
| Cow position: | chr22:7277321-7276861 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 1-475 |
| Cow position: | chr22:3306930-3307384 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 1-489 |
| Cow position: | chr22:5233503-5234007 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 76 |
| Conread position: | 1-489 |
| Cow position: | chr22:18475963-18476471 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 1-489 |
| Cow position: | chr22:44489689-44489185 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 1-492 |
| Cow position: | chr22:10910055-10910568 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 2-252 |
| Cow position: | chr22:309513-309275 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 28 |
| Conread position: | 2-360 |
| Cow position: | chr22:6503873-6504209 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 93 |
| Conread position: | 2-475 |
| Cow position: | chr22:1285135-1285599 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 11 |
| Conread position: | 2-486 |
| Cow position: | chr22:39469719-39470194 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 2-492 |
| Cow position: | chr22:1321411-1320937 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 51 |
| Conread position: | 3-452 |
| Cow position: | chr22:13772586-13772142 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 3-482 |
| Cow position: | chr22:5672535-5672092 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 159, 124 |
| Conread position: | 4-217 |
| Cow position: | chr22:46853142-46852926 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 4-488 |
| Cow position: | chr22:44369821-44370323 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 7-273 |
| Cow position: | chr22:35943600-35943867 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 7-463 |
| Cow position: | chr22:46585519-46585971 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 126 |
| Conread position: | 7-464 |
| Cow position: | chr22:37073376-37073808 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 5 |
| Conread position: | 7-473 |
| Cow position: | chr22:31313136-31312684 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 9 |
| Conread position: | 7-486 |
| Cow position: | chr22:42990964-42990503 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 7-487 |
| Cow position: | chr22:5933187-5933675 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 7-491 |
| Cow position: | chr22:8136404-8136872 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 71 |
| Conread position: | 7-492 |
| Cow position: | chr22:327355-327857 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 7-492 |
| Cow position: | chr22:37265247-37264743 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 335 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 202 |
| Conread position: | 8-171 |
| Cow position: | chr22:4065432-4065269 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-216 |
| Cow position: | chr22:36861739-36861947 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-217 |
| Cow position: | chr22:118024-118232 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 154, 119 |
| Conread position: | 8-253 |
| Cow position: | chr22:44353156-44353402 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 150, 121 |
| Conread position: | 8-261 |
| Cow position: | chr22:44395572-44395320 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 8-274 |
| Cow position: | chr22:31335241-31335506 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 121 |
| Conread position: | 8-274 |
| Cow position: | chr22:46635906-46636173 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 155, 66 |
| Conread position: | 8-466 |
| Cow position: | chr22:560908-561355 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 122 |
| Conread position: | 8-466 |
| Cow position: | chr22:17328948-17329391 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-474 |
| Cow position: | chr22:32348180-32348611 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 376, 8 |
| Conread position: | 8-477 |
| Cow position: | chr22:44933771-44933315 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr22:19143908-19144376 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 48 |
| Conread position: | 8-486 |
| Cow position: | chr22:21589124-21588659 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 117 |
| Conread position: | 8-488 |
| Cow position: | chr22:5307909-5307407 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 121 |
| Conread position: | 8-489 |
| Cow position: | chr22:693423-692932 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 8-489 |
| Cow position: | chr22:1878583-1878127 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 273, 89 |
| Conread position: | 8-489 |
| Cow position: | chr22:3278562-3279059 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 102 |
| Conread position: | 8-489 |
| Cow position: | chr22:6985046-6984544 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr22:24949621-24949119 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr22:27309985-27310487 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 106 |
| Conread position: | 8-490 |
| Cow position: | chr22:35672564-35673067 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-492 |
| Cow position: | chr22:34168123-34167639 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 9-464 |
| Cow position: | chr22:526119-526563 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 81 |
| Conread position: | 9-492 |
| Cow position: | chr22:16200283-16199788 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 12-423 |
| Cow position: | chr22:36736557-36736169 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 69 |
| Conread position: | 15-369 |
| Cow position: | chr22:1270714-1271066 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 15-376 |
| Cow position: | chr22:37131435-37131091 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 15-466 |
| Cow position: | chr22:44457098-44456658 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 114 |
| Conread position: | 15-489 |
| Cow position: | chr22:10546435-10545940 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 111 |
| Conread position: | 16-211 |
| Cow position: | chr22:18816599-18816793 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 146, 49 |
| Conread position: | 36-345 |
| Cow position: | chr22:12732308-12732602 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 56-489 |
| Cow position: | chr22:6020569-6020126 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 69 |
| Conread position: | 59-225 |
| Cow position: | chr22:18930318-18930153 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 65-486 |
| Cow position: | chr22:36180879-36180456 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 54 |
| Conread position: | 67-423 |
| Cow position: | chr22:40380931-40380606 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 97-432 |
| Cow position: | chr22:44609342-44609011 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 129-486 |
| Cow position: | chr22:27386715-27387070 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 160-373 |
| Cow position: | chr22:48004307-48004096 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 199-486 |
| Cow position: | chr22:36862110-36862389 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 237-475 |
| Cow position: | chr22:6332275-6332050 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 262-418 |
| Cow position: | chr22:10077172-10077327 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 265-458 |
| Cow position: | chr22:46636443-46636635 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 277-476 |
| Cow position: | chr22:36266930-36266733 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 149, 100 |
| Conread position: | 300-492 |
| Cow position: | chr22:44353636-44353825 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 304-454 |
| Cow position: | chr22:18817178-18817327 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 304-492 |
| Cow position: | chr22:11030154-11029974 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 335-473 |
| Cow position: | chr22:12732826-12732963 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.