Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-157
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               1-168
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               161, 126
               

               Conread position:
               1-210
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               162, 79
               

               Conread position:
               1-217
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               161, 76
               

               Conread position:
               1-217
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               86, 127
               

               Conread position:
               1-226
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 126
               

               Conread position:
               1-271
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               161, 56
               

               Conread position:
               1-317
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               161, 108
               

               Conread position:
               1-318
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               202, 78
               

               Conread position:
               1-457
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 126
               

               Conread position:
               1-479
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               317
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               82, 117
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 123
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 89
               

               Conread position:
               2-371
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               99, 281
               

               Conread position:
               2-424
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 10
               

               Conread position:
               2-459
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               111, 185
               

               Conread position:
               2-465
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 17
               

               Conread position:
               2-469
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 10
               

               Conread position:
               2-486
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 10
               

               Conread position:
               2-492
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 10
               

               Conread position:
               3-477
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               6-454
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 123
               

               Conread position:
               7-486
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 123
               

               Conread position:
               7-486
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 5
               

               Conread position:
               8-201
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               155
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-253
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               99, 118
               

               Conread position:
               8-429
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-452
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 109
               

               Conread position:
               8-456
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 121
               

               Conread position:
               8-465
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-466
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 145
               

               Conread position:
               8-474
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 87
               

               Conread position:
               8-477
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 41
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               338
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 119
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 97
               

               Conread position:
               9-491
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 98
               

               Conread position:
               12-210
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               156
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-467
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 13
               

               Conread position:
               12-477
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               14, 78
               

               Conread position:
               15-226
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               143, 114
               

               Conread position:
               16-210
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               108, 113
               

               Conread position:
               20-175
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               143, 109
               

               Conread position:
               65-466
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 65
               

               Conread position:
               83-486
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 47
               

               Conread position:
               169-474
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               200-492
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               31, 13
               

               Conread position:
               230-417
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               230-428
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               268-492
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               332-452
               

               Cow position:
               
               

               Alignm length:
               121
               

               Alignm identity:
               95
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               80, 0
               
Show alignments to all cow chromosomes.