Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-157 |
| Cow position: | chr23:2725656-2725506 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-168 |
| Cow position: | chr23:8980690-8980857 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 161, 126 |
| Conread position: | 1-210 |
| Cow position: | chr23:16481555-16481761 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 162, 79 |
| Conread position: | 1-217 |
| Cow position: | chr23:2765580-2765784 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 76 |
| Conread position: | 1-217 |
| Cow position: | chr23:5779286-5779502 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 86, 127 |
| Conread position: | 1-226 |
| Cow position: | chr23:1330487-1330711 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 126 |
| Conread position: | 1-271 |
| Cow position: | chr23:7273456-7273191 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 161, 56 |
| Conread position: | 1-317 |
| Cow position: | chr23:4359628-4359319 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 161, 108 |
| Conread position: | 1-318 |
| Cow position: | chr23:22875833-22876144 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 202, 78 |
| Conread position: | 1-457 |
| Cow position: | chr23:988842-989273 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 126 |
| Conread position: | 1-479 |
| Cow position: | chr23:2340201-2339740 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 317 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 1-492 |
| Cow position: | chr23:5874973-5875429 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 123 |
| Conread position: | 1-492 |
| Cow position: | chr23:31595379-31595850 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 89 |
| Conread position: | 2-371 |
| Cow position: | chr23:19449826-19449455 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 281 |
| Conread position: | 2-424 |
| Cow position: | chr23:4276754-4276357 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 10 |
| Conread position: | 2-459 |
| Cow position: | chr23:19332599-19333052 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 185 |
| Conread position: | 2-465 |
| Cow position: | chr23:1025260-1025706 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 2-469 |
| Cow position: | chr23:1141356-1140911 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 10 |
| Conread position: | 2-486 |
| Cow position: | chr23:2027319-2027800 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 2-492 |
| Cow position: | chr23:19489337-19488846 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 10 |
| Conread position: | 3-477 |
| Cow position: | chr23:3013431-3012975 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 6-454 |
| Cow position: | chr23:15525407-15524981 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 123 |
| Conread position: | 7-486 |
| Cow position: | chr23:22147466-22147953 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 123 |
| Conread position: | 7-486 |
| Cow position: | chr23:36031577-36032049 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 5 |
| Conread position: | 8-201 |
| Cow position: | chr23:30636510-30636703 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-253 |
| Cow position: | chr23:31446606-31446361 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-429 |
| Cow position: | chr23:2716143-2715721 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-452 |
| Cow position: | chr23:15220106-15220533 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 8-456 |
| Cow position: | chr23:2795770-2796200 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 121 |
| Conread position: | 8-465 |
| Cow position: | chr23:3881903-3882345 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-466 |
| Cow position: | chr23:11778277-11777834 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 8-474 |
| Cow position: | chr23:16617059-16617496 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 87 |
| Conread position: | 8-477 |
| Cow position: | chr23:28913204-28912747 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr23:4640833-4641298 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr23:4815864-4815404 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 41 |
| Conread position: | 8-486 |
| Cow position: | chr23:27399295-27398831 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-492 |
| Cow position: | chr23:4434256-4433765 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 154, 99 |
| Conread position: | 8-492 |
| Cow position: | chr23:19950792-19951295 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 119 |
| Conread position: | 8-492 |
| Cow position: | chr23:20302003-20301499 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-492 |
| Cow position: | chr23:28217082-28216580 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 97 |
| Conread position: | 9-491 |
| Cow position: | chr23:14974978-14975474 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 98 |
| Conread position: | 12-210 |
| Cow position: | chr23:14966185-14966383 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-467 |
| Cow position: | chr23:4509893-4509441 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 13 |
| Conread position: | 12-477 |
| Cow position: | chr23:34174972-34174533 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 15-226 |
| Cow position: | chr23:967563-967773 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 143, 114 |
| Conread position: | 16-210 |
| Cow position: | chr23:2574349-2574155 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 108, 113 |
| Conread position: | 20-175 |
| Cow position: | chr23:6469495-6469650 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 143, 109 |
| Conread position: | 65-466 |
| Cow position: | chr23:2757236-2756850 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 83-486 |
| Cow position: | chr23:15176768-15176377 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 169-474 |
| Cow position: | chr23:4888397-4888107 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 200-492 |
| Cow position: | chr23:2573890-2573604 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 230-417 |
| Cow position: | chr23:8981230-8981414 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 230-428 |
| Cow position: | chr23:2045618-2045423 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 268-492 |
| Cow position: | chr23:810670-810448 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 332-452 |
| Cow position: | chr23:40460468-40460349 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.