Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-210 |
| Cow position: | chr24:36560199-36560396 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 46 |
| Conread position: | 1-317 |
| Cow position: | chr24:12114148-12114462 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 1-441 |
| Cow position: | chr24:17187430-17187018 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 126 |
| Conread position: | 1-466 |
| Cow position: | chr24:12161763-12161310 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 1-469 |
| Cow position: | chr24:12131598-12132054 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 162, 15 |
| Conread position: | 1-471 |
| Cow position: | chr24:5993089-5993571 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 1-472 |
| Cow position: | chr24:16649416-16649889 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 1-474 |
| Cow position: | chr24:35841729-35842167 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 162, 105 |
| Conread position: | 1-474 |
| Cow position: | chr24:38635623-38635169 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 24 |
| Conread position: | 1-474 |
| Cow position: | chr24:39678314-39677861 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 320 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 161, 6 |
| Conread position: | 1-478 |
| Cow position: | chr24:6057555-6057098 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 315 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 162, 94 |
| Conread position: | 1-488 |
| Cow position: | chr24:6335583-6335095 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 1-489 |
| Cow position: | chr24:6645303-6644793 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-489 |
| Cow position: | chr24:12236942-12236460 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 1-492 |
| Cow position: | chr24:6145244-6144765 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 128 |
| Conread position: | 2-217 |
| Cow position: | chr24:35838742-35838957 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 131 |
| Conread position: | 2-260 |
| Cow position: | chr24:12086083-12085828 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 157, 127 |
| Conread position: | 2-486 |
| Cow position: | chr24:19833266-19832793 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-492 |
| Cow position: | chr24:37216609-37216124 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 10 |
| Conread position: | 3-433 |
| Cow position: | chr24:32125625-32126023 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 4-252 |
| Cow position: | chr24:36707740-36707493 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 4-280 |
| Cow position: | chr24:36297051-36296772 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 154, 64 |
| Conread position: | 4-470 |
| Cow position: | chr24:37301195-37301621 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 5-474 |
| Cow position: | chr24:1447450-1447000 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 90 |
| Conread position: | 6-283 |
| Cow position: | chr24:13181460-13181730 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 6-489 |
| Cow position: | chr24:13021552-13021079 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 6-492 |
| Cow position: | chr24:14390843-14391316 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 7-275 |
| Cow position: | chr24:35990777-35991038 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 7-466 |
| Cow position: | chr24:33933246-33932781 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 112 |
| Conread position: | 7-482 |
| Cow position: | chr24:12797882-12798342 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 89 |
| Conread position: | 8-219 |
| Cow position: | chr24:12485440-12485650 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-282 |
| Cow position: | chr24:2635997-2635711 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 158, 115 |
| Conread position: | 8-308 |
| Cow position: | chr24:6083894-6083593 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-315 |
| Cow position: | chr24:7060979-7060681 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 157, 98 |
| Conread position: | 8-317 |
| Cow position: | chr24:20268095-20267785 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-317 |
| Cow position: | chr24:44017423-44017113 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-430 |
| Cow position: | chr24:14873464-14873873 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 117 |
| Conread position: | 8-456 |
| Cow position: | chr24:15392426-15392869 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 99 |
| Conread position: | 8-466 |
| Cow position: | chr24:6352073-6351627 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 309 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 114, 98 |
| Conread position: | 8-469 |
| Cow position: | chr24:4415646-4416097 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 129 |
| Conread position: | 8-470 |
| Cow position: | chr24:12288845-12289295 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 87 |
| Conread position: | 8-486 |
| Cow position: | chr24:14384734-14385204 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 105 |
| Conread position: | 8-489 |
| Cow position: | chr24:6025218-6025721 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 8-489 |
| Cow position: | chr24:6434118-6433613 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 115 |
| Conread position: | 8-489 |
| Cow position: | chr24:9188854-9189353 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 117 |
| Conread position: | 8-489 |
| Cow position: | chr24:22793054-22792549 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr24:33739467-33739967 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 55 |
| Conread position: | 8-492 |
| Cow position: | chr24:12224603-12225083 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 139, 48 |
| Conread position: | 12-200 |
| Cow position: | chr24:13531657-13531849 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 12-240 |
| Cow position: | chr24:13188061-13187842 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 12-474 |
| Cow position: | chr24:32331214-32330768 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 13-486 |
| Cow position: | chr24:29186678-29186212 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 116 |
| Conread position: | 36-487 |
| Cow position: | chr24:7712449-7712913 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 129, 87 |
| Conread position: | 53-454 |
| Cow position: | chr24:17314481-17314873 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 56-474 |
| Cow position: | chr24:148763-149168 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 70-453 |
| Cow position: | chr24:14583914-14583558 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 100-317 |
| Cow position: | chr24:16084893-16085106 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 129-477 |
| Cow position: | chr24:11156885-11157201 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 160-469 |
| Cow position: | chr24:9544552-9544259 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 172-492 |
| Cow position: | chr24:6083688-6083375 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 183-489 |
| Cow position: | chr24:10657735-10657430 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 191-486 |
| Cow position: | chr24:6357706-6357426 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 262, 22 |
| Conread position: | 200-489 |
| Cow position: | chr24:36560536-36560829 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 27, 220 |
| Conread position: | 220-489 |
| Cow position: | chr24:29306176-29306446 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 196 |
| Conread position: | 228-423 |
| Cow position: | chr24:13531852-13532046 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 246-473 |
| Cow position: | chr24:36707274-36707053 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 295-492 |
| Cow position: | chr24:13187108-13186911 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 336-492 |
| Cow position: | chr24:12114563-12114716 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.