Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-198 |
| Cow position: | chr25:34656604-34656801 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 124 |
| Conread position: | 1-210 |
| Cow position: | chr25:14016017-14015809 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 22 |
| Conread position: | 1-217 |
| Cow position: | chr25:18027788-18028002 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 161, 98 |
| Conread position: | 1-290 |
| Cow position: | chr25:18411450-18411731 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 162, 71 |
| Conread position: | 1-468 |
| Cow position: | chr25:11375505-11375947 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 126 |
| Conread position: | 1-470 |
| Cow position: | chr25:18092860-18092398 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 109 |
| Conread position: | 1-489 |
| Cow position: | chr25:35362578-35363087 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 125 |
| Conread position: | 1-492 |
| Cow position: | chr25:8674756-8674291 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 118 |
| Conread position: | 1-492 |
| Cow position: | chr25:18275983-18276480 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 125 |
| Conread position: | 1-492 |
| Cow position: | chr25:18302618-18302136 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 124 |
| Conread position: | 2-201 |
| Cow position: | chr25:12943598-12943796 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-423 |
| Cow position: | chr25:17468854-17469258 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 122, 10 |
| Conread position: | 2-426 |
| Cow position: | chr25:24171869-24171449 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 160, 88 |
| Conread position: | 2-468 |
| Cow position: | chr25:11933685-11934167 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 45 |
| Conread position: | 7-477 |
| Cow position: | chr25:12759760-12760228 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 8-236 |
| Cow position: | chr25:20629411-20629181 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-317 |
| Cow position: | chr25:17589714-17590019 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 85 |
| Conread position: | 8-317 |
| Cow position: | chr25:20777063-20777374 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 97, 109 |
| Conread position: | 8-363 |
| Cow position: | chr25:25506484-25506140 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-395 |
| Cow position: | chr25:18890181-18890555 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 121 |
| Conread position: | 8-428 |
| Cow position: | chr25:26279100-26278703 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 121 |
| Conread position: | 8-429 |
| Cow position: | chr25:26867059-26866652 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 123 |
| Conread position: | 8-457 |
| Cow position: | chr25:20494196-20493763 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 8-469 |
| Cow position: | chr25:34347158-34347604 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 57 |
| Conread position: | 8-473 |
| Cow position: | chr25:19288513-19288963 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 151, 79 |
| Conread position: | 8-486 |
| Cow position: | chr25:22147328-22146865 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 35 |
| Conread position: | 8-487 |
| Cow position: | chr25:32579801-32579319 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 157, 62 |
| Conread position: | 8-489 |
| Cow position: | chr25:33991222-33991698 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 8-492 |
| Cow position: | chr25:26922065-26921560 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 121 |
| Conread position: | 12-457 |
| Cow position: | chr25:23345872-23346297 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 12-486 |
| Cow position: | chr25:13780866-13780404 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-488 |
| Cow position: | chr25:19916913-19916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 32-473 |
| Cow position: | chr25:34014536-34014962 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 97 |
| Conread position: | 49-314 |
| Cow position: | chr25:17563110-17563374 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 72 |
| Conread position: | 49-461 |
| Cow position: | chr25:17560801-17561217 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 72 |
| Conread position: | 64-487 |
| Cow position: | chr25:18173114-18172681 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 33 |
| Conread position: | 67-273 |
| Cow position: | chr25:32978983-32979191 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 137-423 |
| Cow position: | chr25:36239934-36239659 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 75 |
| Conread position: | 183-488 |
| Cow position: | chr25:15444033-15443728 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 224-365 |
| Cow position: | chr25:34657351-34657492 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-489 |
| Cow position: | chr25:32979510-32979703 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 304-487 |
| Cow position: | chr25:12944194-12944379 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 152, 111 |
| Conread position: | 308-489 |
| Cow position: | chr25:20777398-20777577 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
Show alignments to all cow chromosomes.