Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-217 |
| Cow position: | chr26:23605038-23605262 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 86, 157 |
| Conread position: | 1-242 |
| Cow position: | chr26:6850312-6850551 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 158, 128 |
| Conread position: | 1-242 |
| Cow position: | chr26:20254932-20254698 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 62 |
| Conread position: | 1-317 |
| Cow position: | chr26:24201485-24201167 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-423 |
| Cow position: | chr26:12574531-12574922 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 209 |
| Conread position: | 1-456 |
| Cow position: | chr26:3691668-3691243 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 162, 24 |
| Conread position: | 1-489 |
| Cow position: | chr26:30782631-30782122 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 7-226 |
| Cow position: | chr26:3074382-3074172 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 155, 5 |
| Conread position: | 8-210 |
| Cow position: | chr26:15144902-15145104 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 157, 117 |
| Conread position: | 8-225 |
| Cow position: | chr26:18854943-18854734 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 157, 99 |
| Conread position: | 8-260 |
| Cow position: | chr26:5675025-5674772 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 8-392 |
| Cow position: | chr26:8869732-8869353 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-423 |
| Cow position: | chr26:2198482-2198065 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 198, 102 |
| Conread position: | 8-466 |
| Cow position: | chr26:9563503-9563945 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-466 |
| Cow position: | chr26:17397075-17397527 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 122 |
| Conread position: | 8-488 |
| Cow position: | chr26:11254202-11254706 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 119 |
| Conread position: | 8-489 |
| Cow position: | chr26:2352503-2352992 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 8-489 |
| Cow position: | chr26:3030955-3031450 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 8-489 |
| Cow position: | chr26:9112321-9111819 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-489 |
| Cow position: | chr26:12588710-12589206 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 86 |
| Conread position: | 8-489 |
| Cow position: | chr26:19998342-19997840 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 9-216 |
| Cow position: | chr26:16904635-16904434 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 9-486 |
| Cow position: | chr26:19351659-19352128 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 120 |
| Conread position: | 12-282 |
| Cow position: | chr26:12655797-12655540 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 149, 20 |
| Conread position: | 12-492 |
| Cow position: | chr26:9846283-9846759 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 110 |
| Conread position: | 16-421 |
| Cow position: | chr26:20262694-20262330 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 143, 16 |
| Conread position: | 26-489 |
| Cow position: | chr26:8918817-8918340 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 283 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 92 |
| Conread position: | 28-456 |
| Cow position: | chr26:6516697-6516282 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 49-492 |
| Cow position: | chr26:34012835-34012400 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 64-457 |
| Cow position: | chr26:30590441-30590822 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 66 |
| Conread position: | 87-476 |
| Cow position: | chr26:9854331-9854711 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 99-470 |
| Cow position: | chr26:9850881-9851240 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 278-476 |
| Cow position: | chr26:16904236-16904040 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 181, 18 |
| Conread position: | 304-466 |
| Cow position: | chr26:5674464-5674304 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 304-490 |
| Cow position: | chr26:6850705-6850893 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 165, 111 |
Show alignments to all cow chromosomes.