Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-210 |
| Cow position: | chr27:15278266-15278475 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 162, 113 |
| Conread position: | 1-217 |
| Cow position: | chr27:27051463-27051248 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 1-466 |
| Cow position: | chr27:5910665-5910214 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 55 |
| Conread position: | 1-477 |
| Cow position: | chr27:26324613-26324146 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 128 |
| Conread position: | 1-482 |
| Cow position: | chr27:26556179-26556656 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 1-489 |
| Cow position: | chr27:25002728-25003174 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 2-486 |
| Cow position: | chr27:893009-892541 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 10 |
| Conread position: | 2-486 |
| Cow position: | chr27:9993406-9993870 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 8-418 |
| Cow position: | chr27:13897987-13897584 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 117 |
| Conread position: | 8-460 |
| Cow position: | chr27:25999263-25999698 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 8-465 |
| Cow position: | chr27:27662686-27662241 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-468 |
| Cow position: | chr27:16439122-16438692 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 92, 117 |
| Conread position: | 8-473 |
| Cow position: | chr27:25117036-25116589 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 8-477 |
| Cow position: | chr27:14460665-14461121 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 8-486 |
| Cow position: | chr27:1209143-1208678 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 70 |
| Conread position: | 8-486 |
| Cow position: | chr27:23334955-23334486 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-489 |
| Cow position: | chr27:15541120-15540632 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr27:16034601-16035099 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 66 |
| Conread position: | 8-492 |
| Cow position: | chr27:2364543-2364030 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 345 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 105, 118 |
| Conread position: | 8-492 |
| Cow position: | chr27:25805089-25805556 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 9-472 |
| Cow position: | chr27:21288419-21288879 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 32-224 |
| Cow position: | chr27:16432240-16432048 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 96 |
| Conread position: | 32-466 |
| Cow position: | chr27:5906798-5906380 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 59-466 |
| Cow position: | chr27:11471652-11472046 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 74-219 |
| Cow position: | chr27:23930417-23930562 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 77-486 |
| Cow position: | chr27:15638785-15639188 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 132 |
| Conread position: | 140-492 |
| Cow position: | chr27:5985433-5985774 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 230-405 |
| Cow position: | chr27:15279045-15279220 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-492 |
| Cow position: | chr27:15331557-15331333 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 124, 117 |
Show alignments to all cow chromosomes.